Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2065

Experiment: Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2064 and araD are separated by 1 nucleotidesaraD and Shewana3_2066 are separated by 38 nucleotides Shewana3_2064: Shewana3_2064 - ribulokinase (RefSeq), at 2,470,698 to 2,472,371 _2064 Shewana3_2065: araD - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data), at 2,472,373 to 2,473,068 araD Shewana3_2066: Shewana3_2066 - L-arabinose isomerase (EC 5.3.1.4) (from data), at 2,473,107 to 2,474,609 _2066 Position (kb) 2472 2473 2474Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2471.471 kb on - strand, within Shewana3_2064at 2471.549 kb on + strand, within Shewana3_2064at 2471.911 kb on - strand, within Shewana3_2064at 2472.003 kb on + strand, within Shewana3_2064at 2472.004 kb on - strand, within Shewana3_2064at 2472.076 kb on + strand, within Shewana3_2064at 2472.263 kb on - strandat 2472.532 kb on + strand, within araDat 2472.540 kb on - strand, within araDat 2472.540 kb on - strand, within araDat 2472.653 kb on + strand, within araDat 2472.687 kb on - strand, within araDat 2472.716 kb on + strand, within araDat 2472.751 kb on - strand, within araDat 2472.875 kb on + strand, within araDat 2472.983 kb on + strand, within araDat 2473.163 kb on - strandat 2473.163 kb on - strandat 2473.359 kb on - strand, within Shewana3_2066at 2473.432 kb on - strand, within Shewana3_2066at 2473.714 kb on + strand, within Shewana3_2066at 2473.714 kb on + strand, within Shewana3_2066at 2473.748 kb on - strand, within Shewana3_2066at 2473.756 kb on - strand, within Shewana3_2066at 2473.926 kb on + strand, within Shewana3_2066

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
remove
2,471,471 - Shewana3_2064 0.46 +2.3
2,471,549 + Shewana3_2064 0.51 +1.9
2,471,911 - Shewana3_2064 0.72 +3.9
2,472,003 + Shewana3_2064 0.78 -0.4
2,472,004 - Shewana3_2064 0.78 +1.9
2,472,076 + Shewana3_2064 0.82 +2.0
2,472,263 - +1.1
2,472,532 + araD Shewana3_2065 0.23 -0.6
2,472,540 - araD Shewana3_2065 0.24 +1.9
2,472,540 - araD Shewana3_2065 0.24 +4.9
2,472,653 + araD Shewana3_2065 0.40 -0.6
2,472,687 - araD Shewana3_2065 0.45 +0.4
2,472,716 + araD Shewana3_2065 0.49 -0.7
2,472,751 - araD Shewana3_2065 0.54 -0.0
2,472,875 + araD Shewana3_2065 0.72 -0.0
2,472,983 + araD Shewana3_2065 0.88 -1.0
2,473,163 - +1.3
2,473,163 - +1.5
2,473,359 - Shewana3_2066 0.17 -0.3
2,473,432 - Shewana3_2066 0.22 -0.2
2,473,714 + Shewana3_2066 0.40 -0.6
2,473,714 + Shewana3_2066 0.40 +1.0
2,473,748 - Shewana3_2066 0.43 -1.1
2,473,756 - Shewana3_2066 0.43 -0.3
2,473,926 + Shewana3_2066 0.54 -1.4

Or see this region's nucleotide sequence