Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2065
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,471,471 | - | Shewana3_2064 | 0.46 | +2.3 | |
| 2,471,549 | + | Shewana3_2064 | 0.51 | +1.9 | |
| 2,471,911 | - | Shewana3_2064 | 0.72 | +3.9 | |
| 2,472,003 | + | Shewana3_2064 | 0.78 | -0.4 | |
| 2,472,004 | - | Shewana3_2064 | 0.78 | +1.9 | |
| 2,472,076 | + | Shewana3_2064 | 0.82 | +2.0 | |
| 2,472,263 | - | +1.1 | |||
| 2,472,532 | + | araD | Shewana3_2065 | 0.23 | -0.6 |
| 2,472,540 | - | araD | Shewana3_2065 | 0.24 | +1.9 |
| 2,472,540 | - | araD | Shewana3_2065 | 0.24 | +4.9 |
| 2,472,653 | + | araD | Shewana3_2065 | 0.40 | -0.6 |
| 2,472,687 | - | araD | Shewana3_2065 | 0.45 | +0.4 |
| 2,472,716 | + | araD | Shewana3_2065 | 0.49 | -0.7 |
| 2,472,751 | - | araD | Shewana3_2065 | 0.54 | -0.0 |
| 2,472,875 | + | araD | Shewana3_2065 | 0.72 | -0.0 |
| 2,472,983 | + | araD | Shewana3_2065 | 0.88 | -1.0 |
| 2,473,163 | - | +1.3 | |||
| 2,473,163 | - | +1.5 | |||
| 2,473,359 | - | Shewana3_2066 | 0.17 | -0.3 | |
| 2,473,432 | - | Shewana3_2066 | 0.22 | -0.2 | |
| 2,473,714 | + | Shewana3_2066 | 0.40 | -0.6 | |
| 2,473,714 | + | Shewana3_2066 | 0.40 | +1.0 | |
| 2,473,748 | - | Shewana3_2066 | 0.43 | -1.1 | |
| 2,473,756 | - | Shewana3_2066 | 0.43 | -0.3 | |
| 2,473,926 | + | Shewana3_2066 | 0.54 | -1.4 |
Or see this region's nucleotide sequence