Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2008

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2007 and Shewana3_2008 are separated by 255 nucleotidesShewana3_2008 and Shewana3_2009 overlap by 46 nucleotides Shewana3_2007: Shewana3_2007 - polysaccharide biosynthesis protein (RefSeq), at 2,393,139 to 2,394,467 _2007 Shewana3_2008: Shewana3_2008 - hypothetical protein (RefSeq), at 2,394,723 to 2,396,018 _2008 Shewana3_2009: Shewana3_2009 - hypothetical protein (RefSeq), at 2,395,973 to 2,397,385 _2009 Position (kb) 2394 2395 2396 2397Strain fitness (log2 ratio) -1 0 1 2 3at 2394.143 kb on - strand, within Shewana3_2007at 2394.346 kb on - strandat 2394.475 kb on - strandat 2394.809 kb on + strandat 2394.820 kb on + strandat 2394.828 kb on - strandat 2394.929 kb on + strand, within Shewana3_2008at 2395.059 kb on + strand, within Shewana3_2008at 2395.678 kb on + strand, within Shewana3_2008at 2395.713 kb on + strand, within Shewana3_2008at 2395.714 kb on + strand, within Shewana3_2008at 2396.080 kb on - strandat 2396.633 kb on + strand, within Shewana3_2009at 2396.891 kb on + strand, within Shewana3_2009at 2396.911 kb on - strand, within Shewana3_2009at 2397.018 kb on - strand, within Shewana3_2009

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,394,143 - Shewana3_2007 0.76 +1.7
2,394,346 - +1.7
2,394,475 - -0.7
2,394,809 + +1.0
2,394,820 + +3.0
2,394,828 - -0.2
2,394,929 + Shewana3_2008 0.16 -0.1
2,395,059 + Shewana3_2008 0.26 -0.6
2,395,678 + Shewana3_2008 0.74 +0.3
2,395,713 + Shewana3_2008 0.76 +1.0
2,395,714 + Shewana3_2008 0.76 +2.0
2,396,080 - +0.3
2,396,633 + Shewana3_2009 0.47 -1.4
2,396,891 + Shewana3_2009 0.65 -0.2
2,396,911 - Shewana3_2009 0.66 +3.0
2,397,018 - Shewana3_2009 0.74 +3.0

Or see this region's nucleotide sequence