Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1995 and Shewana3_1996 are separated by 197 nucleotides Shewana3_1996 and Shewana3_1997 are separated by 627 nucleotides
Shewana3_1995: Shewana3_1995 - hypothetical protein (RefSeq), at 2,377,883 to 2,379,940
_1995
Shewana3_1996: Shewana3_1996 - phage integrase family protein (RefSeq), at 2,380,138 to 2,381,247
_1996
Shewana3_1997: Shewana3_1997 - hypothetical protein (RefSeq), at 2,381,875 to 2,382,375
_1997
Position (kb)
2380
2381
2382 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2379.448 kb on + strand, within Shewana3_1995 at 2379.477 kb on + strand, within Shewana3_1995 at 2379.557 kb on - strand, within Shewana3_1995 at 2379.570 kb on + strand, within Shewana3_1995 at 2379.606 kb on + strand, within Shewana3_1995 at 2379.651 kb on + strand, within Shewana3_1995 at 2379.684 kb on - strand, within Shewana3_1995 at 2379.716 kb on + strand, within Shewana3_1995 at 2379.754 kb on + strand at 2379.802 kb on - strand at 2379.927 kb on - strand at 2379.983 kb on + strand at 2380.401 kb on - strand, within Shewana3_1996 at 2380.467 kb on + strand, within Shewana3_1996 at 2380.670 kb on + strand, within Shewana3_1996 at 2380.670 kb on + strand, within Shewana3_1996 at 2380.821 kb on - strand, within Shewana3_1996 at 2381.447 kb on + strand at 2381.455 kb on - strand at 2381.867 kb on - strand at 2382.043 kb on + strand, within Shewana3_1997
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,379,448 + Shewana3_1995 0.76 +3.1 2,379,477 + Shewana3_1995 0.77 +2.1 2,379,557 - Shewana3_1995 0.81 +2.5 2,379,570 + Shewana3_1995 0.82 +3.1 2,379,606 + Shewana3_1995 0.84 +2.1 2,379,651 + Shewana3_1995 0.86 +4.1 2,379,684 - Shewana3_1995 0.88 +1.7 2,379,716 + Shewana3_1995 0.89 +2.1 2,379,754 + +3.1 2,379,802 - +1.7 2,379,927 - +3.1 2,379,983 + +2.5 2,380,401 - Shewana3_1996 0.24 +2.5 2,380,467 + Shewana3_1996 0.30 +3.1 2,380,670 + Shewana3_1996 0.48 +1.7 2,380,670 + Shewana3_1996 0.48 +2.5 2,380,821 - Shewana3_1996 0.62 +3.1 2,381,447 + +3.1 2,381,455 - +3.6 2,381,867 - +4.1 2,382,043 + Shewana3_1997 0.34 -0.6
Or see this region's nucleotide sequence