Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1989

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpssA and emrD are separated by 53 nucleotidesemrD and ampC are separated by 373 nucleotides Shewana3_1988: pssA - phosphatidylserine synthase (RefSeq), at 2,366,291 to 2,367,604 pssA Shewana3_1989: emrD - multidrug resistance protein D (RefSeq), at 2,367,658 to 2,368,902 emrD Shewana3_1990: ampC - beta-lactamase (RefSeq), at 2,369,276 to 2,370,493 ampC Position (kb) 2367 2368 2369Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2367.804 kb on - strand, within emrDat 2367.841 kb on - strand, within emrDat 2368.825 kb on + strandat 2369.054 kb on - strandat 2369.360 kb on + strandat 2369.429 kb on + strand, within ampCat 2369.430 kb on + strand, within ampCat 2369.547 kb on + strand, within ampCat 2369.791 kb on + strand, within ampCat 2369.831 kb on - strand, within ampCat 2369.854 kb on - strand, within ampCat 2369.893 kb on + strand, within ampC

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,367,804 - emrD Shewana3_1989 0.12 -0.8
2,367,841 - emrD Shewana3_1989 0.15 -2.1
2,368,825 + +4.1
2,369,054 - +0.6
2,369,360 + -2.2
2,369,429 + ampC Shewana3_1990 0.13 -0.6
2,369,430 + ampC Shewana3_1990 0.13 -1.2
2,369,547 + ampC Shewana3_1990 0.22 +0.9
2,369,791 + ampC Shewana3_1990 0.42 +0.5
2,369,831 - ampC Shewana3_1990 0.46 +3.1
2,369,854 - ampC Shewana3_1990 0.47 +0.0
2,369,893 + ampC Shewana3_1990 0.51 +0.1

Or see this region's nucleotide sequence