Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1962

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1960 and Shewana3_1961 are separated by 8 nucleotidesShewana3_1961 and Shewana3_1962 overlap by 4 nucleotidesShewana3_1962 and ansA are separated by 70 nucleotides Shewana3_1960: Shewana3_1960 - peptidase M14, carboxypeptidase A (RefSeq), at 2,333,947 to 2,335,074 _1960 Shewana3_1961: Shewana3_1961 - hypothetical protein (RefSeq), at 2,335,083 to 2,335,400 _1961 Shewana3_1962: Shewana3_1962 - hypothetical protein (RefSeq), at 2,335,397 to 2,335,678 _1962 Shewana3_1963: ansA - cytoplasmic asparaginase I (RefSeq), at 2,335,749 to 2,336,762 ansA Position (kb) 2335 2336Strain fitness (log2 ratio) -1 0 1 2at 2334.632 kb on + strand, within Shewana3_1960at 2334.952 kb on - strand, within Shewana3_1960at 2335.024 kb on + strandat 2335.558 kb on + strand, within Shewana3_1962at 2335.845 kb on - strandat 2335.938 kb on - strand, within ansAat 2336.041 kb on - strand, within ansAat 2336.150 kb on - strand, within ansAat 2336.215 kb on + strand, within ansAat 2336.463 kb on + strandat 2336.541 kb on - strand, within ansA

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,334,632 + Shewana3_1960 0.61 +0.5
2,334,952 - Shewana3_1960 0.89 +0.4
2,335,024 + -0.5
2,335,558 + Shewana3_1962 0.57 -0.6
2,335,845 - -0.3
2,335,938 - ansA Shewana3_1963 0.19 +0.9
2,336,041 - ansA Shewana3_1963 0.29 -0.5
2,336,150 - ansA Shewana3_1963 0.40 +0.5
2,336,215 + ansA Shewana3_1963 0.46 +1.3
2,336,463 + +1.8
2,336,541 - ansA Shewana3_1963 0.78 +0.8

Or see this region's nucleotide sequence