Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1955
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,326,094 | - | +4.1 | |||
| 2,326,129 | + | +1.8 | |||
| 2,326,129 | + | +2.1 | |||
| 2,326,129 | + | -1.4 | |||
| 2,326,147 | - | +3.1 | |||
| 2,326,339 | - | Shewana3_1954 | 0.31 | +3.1 | |
| 2,326,369 | + | Shewana3_1954 | 0.35 | +0.9 | |
| 2,327,035 | + | -0.5 | |||
| 2,327,606 | + | -1.4 | |||
| 2,327,748 | + | ruvA | Shewana3_1956 | 0.22 | +0.3 |
| 2,327,758 | + | ruvA | Shewana3_1956 | 0.24 | +2.5 |
| 2,327,848 | - | ruvA | Shewana3_1956 | 0.39 | +2.5 |
| 2,327,865 | + | ruvA | Shewana3_1956 | 0.41 | +2.7 |
| 2,328,507 | + | ruvB | Shewana3_1957 | 0.16 | +3.5 |
Or see this region's nucleotide sequence