Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1936 and Shewana3_1937 are separated by 2 nucleotides Shewana3_1937 and Shewana3_1938 overlap by 4 nucleotides
Shewana3_1936: Shewana3_1936 - thiamine biosynthesis protein ThiC (RefSeq), at 2,301,846 to 2,304,008
_1936
Shewana3_1937: Shewana3_1937 - thiamine-phosphate pyrophosphorylase (RefSeq), at 2,304,011 to 2,305,693
_1937
Shewana3_1938: Shewana3_1938 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,305,690 to 2,306,706
_1938
Position (kb)
2304
2305
2306 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2303.085 kb on + strand, within Shewana3_1936 at 2303.178 kb on + strand, within Shewana3_1936 at 2303.209 kb on + strand, within Shewana3_1936 at 2303.685 kb on + strand, within Shewana3_1936 at 2303.689 kb on - strand, within Shewana3_1936 at 2303.971 kb on - strand at 2303.971 kb on - strand at 2303.987 kb on + strand at 2304.105 kb on - strand at 2304.237 kb on - strand, within Shewana3_1937 at 2304.237 kb on - strand, within Shewana3_1937 at 2304.841 kb on + strand, within Shewana3_1937 at 2304.886 kb on - strand, within Shewana3_1937 at 2304.954 kb on + strand, within Shewana3_1937 at 2304.962 kb on - strand, within Shewana3_1937 at 2305.170 kb on - strand, within Shewana3_1937 at 2305.175 kb on - strand, within Shewana3_1937 at 2305.347 kb on - strand, within Shewana3_1937 at 2305.512 kb on + strand, within Shewana3_1937 at 2305.522 kb on + strand, within Shewana3_1937 at 2305.633 kb on + strand at 2305.794 kb on + strand, within Shewana3_1938 at 2305.888 kb on - strand, within Shewana3_1938 at 2305.960 kb on - strand, within Shewana3_1938 at 2306.164 kb on - strand, within Shewana3_1938 at 2306.166 kb on + strand, within Shewana3_1938 at 2306.350 kb on - strand, within Shewana3_1938 at 2306.457 kb on - strand, within Shewana3_1938
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,303,085 + Shewana3_1936 0.57 -0.9 2,303,178 + Shewana3_1936 0.62 -0.7 2,303,209 + Shewana3_1936 0.63 +1.3 2,303,685 + Shewana3_1936 0.85 +2.6 2,303,689 - Shewana3_1936 0.85 +0.3 2,303,971 - +1.8 2,303,971 - +2.1 2,303,987 + -0.6 2,304,105 - +0.3 2,304,237 - Shewana3_1937 0.13 -1.1 2,304,237 - Shewana3_1937 0.13 -1.2 2,304,841 + Shewana3_1937 0.49 -1.4 2,304,886 - Shewana3_1937 0.52 +4.1 2,304,954 + Shewana3_1937 0.56 -1.0 2,304,962 - Shewana3_1937 0.57 +0.2 2,305,170 - Shewana3_1937 0.69 +0.2 2,305,175 - Shewana3_1937 0.69 +1.3 2,305,347 - Shewana3_1937 0.79 +1.8 2,305,512 + Shewana3_1937 0.89 -1.4 2,305,522 + Shewana3_1937 0.90 +0.3 2,305,633 + +2.6 2,305,794 + Shewana3_1938 0.10 +2.1 2,305,888 - Shewana3_1938 0.19 +2.7 2,305,960 - Shewana3_1938 0.27 -0.6 2,306,164 - Shewana3_1938 0.47 +4.1 2,306,166 + Shewana3_1938 0.47 +2.6 2,306,350 - Shewana3_1938 0.65 +1.8 2,306,457 - Shewana3_1938 0.75 +1.8
Or see this region's nucleotide sequence