Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1931 and Shewana3_1932 are separated by 249 nucleotides Shewana3_1932 and Shewana3_1933 are separated by 111 nucleotides Shewana3_1933 and Shewana3_1934 are separated by 30 nucleotides
Shewana3_1931: Shewana3_1931 - alpha-glucosidase (RefSeq), at 2,295,393 to 2,297,504
_1931
Shewana3_1932: Shewana3_1932 - hypothetical protein (RefSeq), at 2,297,754 to 2,298,578
_1932
Shewana3_1933: Shewana3_1933 - NUDIX hydrolase (RefSeq), at 2,298,690 to 2,299,220
_1933
Shewana3_1934: Shewana3_1934 - hemolysin III family channel protein (RefSeq), at 2,299,251 to 2,299,934
_1934
Position (kb)
2297
2298
2299 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2296.833 kb on - strand, within Shewana3_1931 at 2296.833 kb on - strand, within Shewana3_1931 at 2296.835 kb on + strand, within Shewana3_1931 at 2296.843 kb on - strand, within Shewana3_1931 at 2297.012 kb on - strand, within Shewana3_1931 at 2297.106 kb on - strand, within Shewana3_1931 at 2297.208 kb on + strand, within Shewana3_1931 at 2297.238 kb on + strand, within Shewana3_1931 at 2297.354 kb on + strand at 2297.354 kb on + strand at 2297.388 kb on - strand at 2297.413 kb on - strand at 2297.628 kb on + strand at 2297.636 kb on - strand at 2297.754 kb on + strand at 2297.843 kb on + strand, within Shewana3_1932 at 2298.135 kb on - strand, within Shewana3_1932 at 2298.192 kb on - strand, within Shewana3_1932 at 2298.347 kb on + strand, within Shewana3_1932 at 2298.459 kb on + strand, within Shewana3_1932 at 2298.472 kb on - strand, within Shewana3_1932 at 2298.507 kb on - strand at 2298.612 kb on + strand at 2298.627 kb on + strand at 2298.648 kb on + strand at 2298.844 kb on + strand, within Shewana3_1933 at 2298.863 kb on - strand, within Shewana3_1933 at 2298.876 kb on - strand, within Shewana3_1933 at 2299.361 kb on + strand, within Shewana3_1934 at 2299.369 kb on + strand, within Shewana3_1934 at 2299.397 kb on + strand, within Shewana3_1934 at 2299.442 kb on + strand, within Shewana3_1934
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,296,833 - Shewana3_1931 0.68 +2.6 2,296,833 - Shewana3_1931 0.68 +0.2 2,296,835 + Shewana3_1931 0.68 +1.6 2,296,843 - Shewana3_1931 0.69 +1.8 2,297,012 - Shewana3_1931 0.77 +1.1 2,297,106 - Shewana3_1931 0.81 +4.1 2,297,208 + Shewana3_1931 0.86 +0.8 2,297,238 + Shewana3_1931 0.87 +2.1 2,297,354 + -2.5 2,297,354 + -0.3 2,297,388 - -0.4 2,297,413 - +2.6 2,297,628 + +0.4 2,297,636 - +1.3 2,297,754 + +0.8 2,297,843 + Shewana3_1932 0.11 +2.3 2,298,135 - Shewana3_1932 0.46 +3.1 2,298,192 - Shewana3_1932 0.53 +1.6 2,298,347 + Shewana3_1932 0.72 +2.6 2,298,459 + Shewana3_1932 0.85 -0.8 2,298,472 - Shewana3_1932 0.87 +1.8 2,298,507 - +4.1 2,298,612 + +0.7 2,298,627 + +1.1 2,298,648 + +3.1 2,298,844 + Shewana3_1933 0.29 +3.1 2,298,863 - Shewana3_1933 0.33 +2.1 2,298,876 - Shewana3_1933 0.35 +1.8 2,299,361 + Shewana3_1934 0.16 +4.1 2,299,369 + Shewana3_1934 0.17 +2.6 2,299,397 + Shewana3_1934 0.21 +2.6 2,299,442 + Shewana3_1934 0.28 +0.6
Or see this region's nucleotide sequence