Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1930
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,293,277 | + | Shewana3_1928 | 0.47 | +1.6 | |
2,293,387 | + | Shewana3_1928 | 0.68 | +3.1 | |
2,293,488 | + | Shewana3_1928 | 0.88 | +3.1 | |
2,293,764 | + | +2.6 | |||
2,294,126 | + | Shewana3_1929 | 0.82 | +0.1 | |
2,294,137 | + | Shewana3_1929 | 0.85 | +2.1 | |
2,294,601 | - | Shewana3_1930 | 0.40 | +1.0 | |
2,294,652 | + | Shewana3_1930 | 0.46 | -0.4 | |
2,294,746 | - | Shewana3_1930 | 0.57 | -1.2 | |
2,294,844 | - | Shewana3_1930 | 0.68 | +0.6 | |
2,294,985 | + | Shewana3_1930 | 0.83 | -0.3 | |
2,295,213 | + | +0.1 | |||
2,295,547 | - | +0.3 | |||
2,295,549 | + | +0.7 | |||
2,295,589 | - | +1.8 | |||
2,295,941 | + | Shewana3_1931 | 0.26 | +2.6 | |
2,295,941 | + | Shewana3_1931 | 0.26 | +1.0 | |
2,295,995 | - | Shewana3_1931 | 0.29 | +0.7 | |
2,296,039 | - | Shewana3_1931 | 0.31 | -0.8 |
Or see this region's nucleotide sequence