Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1925
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,289,297 | + | Shewana3_1924 | 0.82 | -0.4 | |
2,289,468 | + | Shewana3_1924 | 0.89 | +2.3 | |
2,289,874 | - | +0.1 | |||
2,289,895 | - | -0.0 | |||
2,289,962 | - | -1.2 | |||
2,290,028 | - | Shewana3_1925 | 0.10 | -0.4 | |
2,290,132 | - | Shewana3_1925 | 0.17 | -0.0 | |
2,290,306 | + | Shewana3_1925 | 0.27 | +0.7 | |
2,290,346 | + | Shewana3_1925 | 0.30 | -0.1 | |
2,290,653 | - | Shewana3_1925 | 0.49 | +0.8 | |
2,290,888 | + | Shewana3_1925 | 0.64 | +2.1 | |
2,291,499 | - | +2.1 | |||
2,291,713 | + | +3.2 | |||
2,291,742 | + | -2.6 | |||
2,291,752 | + | -0.3 | |||
2,291,760 | - | -1.0 | |||
2,291,873 | + | +0.7 | |||
2,291,910 | + | -0.9 | |||
2,291,911 | + | -0.0 | |||
2,291,918 | - | +1.2 | |||
2,291,918 | - | +0.5 | |||
2,292,109 | + | -0.3 | |||
2,292,127 | - | +4.2 | |||
2,292,190 | + | +1.8 | |||
2,292,253 | - | Shewana3_1926 | 0.17 | +1.3 |
Or see this region's nucleotide sequence