Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1891 and Shewana3_1892 are separated by 312 nucleotides Shewana3_1892 and Shewana3_1893 are separated by 109 nucleotides Shewana3_1893 and Shewana3_1894 overlap by 4 nucleotides
Shewana3_1891: Shewana3_1891 - hypothetical protein (RefSeq), at 2,241,128 to 2,241,562
_1891
Shewana3_1892: Shewana3_1892 - 50S ribosomal protein L25P (RefSeq), at 2,241,875 to 2,242,162
_1892
Shewana3_1893: Shewana3_1893 - hypothetical protein (RefSeq), at 2,242,272 to 2,246,621
_1893
Shewana3_1894: Shewana3_1894 - surface antigen (D15) (RefSeq), at 2,246,618 to 2,248,393
_1894
Position (kb)
2242
2243
2244
2245
2246
2247 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2241.481 kb on - strand, within Shewana3_1891 at 2241.616 kb on + strand at 2242.251 kb on + strand at 2242.310 kb on + strand at 2242.318 kb on - strand at 2242.694 kb on - strand at 2242.944 kb on - strand, within Shewana3_1893 at 2243.022 kb on - strand, within Shewana3_1893 at 2243.283 kb on - strand, within Shewana3_1893 at 2243.294 kb on - strand, within Shewana3_1893 at 2243.372 kb on + strand, within Shewana3_1893 at 2243.372 kb on + strand, within Shewana3_1893 at 2243.437 kb on - strand, within Shewana3_1893 at 2243.488 kb on + strand, within Shewana3_1893 at 2243.496 kb on - strand, within Shewana3_1893 at 2243.840 kb on - strand, within Shewana3_1893 at 2243.885 kb on - strand, within Shewana3_1893 at 2244.474 kb on + strand, within Shewana3_1893 at 2244.474 kb on + strand, within Shewana3_1893 at 2244.482 kb on - strand, within Shewana3_1893 at 2244.482 kb on - strand, within Shewana3_1893 at 2244.482 kb on - strand, within Shewana3_1893 at 2244.487 kb on + strand, within Shewana3_1893 at 2244.527 kb on - strand, within Shewana3_1893 at 2244.697 kb on - strand, within Shewana3_1893 at 2244.709 kb on - strand, within Shewana3_1893 at 2245.359 kb on - strand, within Shewana3_1893 at 2245.396 kb on - strand, within Shewana3_1893 at 2245.531 kb on + strand, within Shewana3_1893 at 2245.539 kb on + strand, within Shewana3_1893 at 2245.611 kb on - strand, within Shewana3_1893 at 2245.828 kb on + strand, within Shewana3_1893 at 2246.088 kb on - strand, within Shewana3_1893 at 2246.289 kb on - strand at 2246.320 kb on - strand at 2246.347 kb on + strand at 2246.355 kb on - strand at 2247.051 kb on + strand, within Shewana3_1894 at 2247.059 kb on - strand, within Shewana3_1894 at 2247.117 kb on - strand, within Shewana3_1894 at 2247.342 kb on + strand, within Shewana3_1894
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,241,481 - Shewana3_1891 0.81 -0.4 2,241,616 + +1.8 2,242,251 + +4.2 2,242,310 + +3.2 2,242,318 - +1.0 2,242,694 - -0.0 2,242,944 - Shewana3_1893 0.15 +2.3 2,243,022 - Shewana3_1893 0.17 +4.2 2,243,283 - Shewana3_1893 0.23 +1.8 2,243,294 - Shewana3_1893 0.23 +1.4 2,243,372 + Shewana3_1893 0.25 +4.2 2,243,372 + Shewana3_1893 0.25 +3.2 2,243,437 - Shewana3_1893 0.27 +0.2 2,243,488 + Shewana3_1893 0.28 +4.2 2,243,496 - Shewana3_1893 0.28 +1.4 2,243,840 - Shewana3_1893 0.36 -0.2 2,243,885 - Shewana3_1893 0.37 +2.7 2,244,474 + Shewana3_1893 0.51 +4.2 2,244,474 + Shewana3_1893 0.51 +2.2 2,244,482 - Shewana3_1893 0.51 +3.2 2,244,482 - Shewana3_1893 0.51 +0.9 2,244,482 - Shewana3_1893 0.51 +2.2 2,244,487 + Shewana3_1893 0.51 +1.4 2,244,527 - Shewana3_1893 0.52 +2.6 2,244,697 - Shewana3_1893 0.56 -1.4 2,244,709 - Shewana3_1893 0.56 +0.7 2,245,359 - Shewana3_1893 0.71 +2.6 2,245,396 - Shewana3_1893 0.72 +1.2 2,245,531 + Shewana3_1893 0.75 +3.2 2,245,539 + Shewana3_1893 0.75 +4.2 2,245,611 - Shewana3_1893 0.77 +0.3 2,245,828 + Shewana3_1893 0.82 +4.2 2,246,088 - Shewana3_1893 0.88 +0.2 2,246,289 - +3.2 2,246,320 - +0.6 2,246,347 + +3.2 2,246,355 - +0.2 2,247,051 + Shewana3_1894 0.24 +4.2 2,247,059 - Shewana3_1894 0.25 +0.7 2,247,117 - Shewana3_1894 0.28 -1.0 2,247,342 + Shewana3_1894 0.41 +2.6
Or see this region's nucleotide sequence