Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1887

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1886 and mdoG are separated by 444 nucleotidesmdoG and Shewana3_1888 are separated by 23 nucleotides Shewana3_1886: Shewana3_1886 - ATPase domain-containing protein (RefSeq), at 2,232,915 to 2,234,309 _1886 Shewana3_1887: mdoG - glucan biosynthesis protein G (RefSeq), at 2,234,754 to 2,236,391 mdoG Shewana3_1888: Shewana3_1888 - glucosyltransferase MdoH (RefSeq), at 2,236,415 to 2,238,598 _1888 Position (kb) 2234 2235 2236 2237Strain fitness (log2 ratio) -1 0 1 2 3 4at 2233.771 kb on + strand, within Shewana3_1886at 2233.880 kb on - strand, within Shewana3_1886at 2234.101 kb on - strand, within Shewana3_1886at 2234.123 kb on + strand, within Shewana3_1886at 2234.254 kb on + strandat 2234.285 kb on - strandat 2234.298 kb on - strandat 2234.892 kb on + strandat 2234.913 kb on - strandat 2235.075 kb on - strand, within mdoGat 2235.233 kb on + strand, within mdoGat 2235.322 kb on - strand, within mdoGat 2235.350 kb on + strand, within mdoGat 2236.013 kb on + strand, within mdoGat 2236.082 kb on + strand, within mdoGat 2236.211 kb on + strand, within mdoGat 2236.793 kb on - strand, within Shewana3_1888at 2236.875 kb on - strand, within Shewana3_1888

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,233,771 + Shewana3_1886 0.61 -0.2
2,233,880 - Shewana3_1886 0.69 -1.2
2,234,101 - Shewana3_1886 0.85 +0.6
2,234,123 + Shewana3_1886 0.87 +2.2
2,234,254 + +1.3
2,234,285 - +0.8
2,234,298 - +0.9
2,234,892 + -0.7
2,234,913 - +1.8
2,235,075 - mdoG Shewana3_1887 0.20 +1.4
2,235,233 + mdoG Shewana3_1887 0.29 -0.2
2,235,322 - mdoG Shewana3_1887 0.35 +3.2
2,235,350 + mdoG Shewana3_1887 0.36 +1.2
2,236,013 + mdoG Shewana3_1887 0.77 -0.1
2,236,082 + mdoG Shewana3_1887 0.81 +0.5
2,236,211 + mdoG Shewana3_1887 0.89 -1.5
2,236,793 - Shewana3_1888 0.17 +2.2
2,236,875 - Shewana3_1888 0.21 +4.2

Or see this region's nucleotide sequence