Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1884

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1883 and Shewana3_1884 are separated by 97 nucleotidesShewana3_1884 and Shewana3_1885 are separated by 10 nucleotidesShewana3_1885 and Shewana3_1886 are separated by 113 nucleotides Shewana3_1883: Shewana3_1883 - hypothetical protein (RefSeq), at 2,229,785 to 2,231,131 _1883 Shewana3_1884: Shewana3_1884 - ApbE family lipoprotein (RefSeq), at 2,231,229 to 2,232,131 _1884 Shewana3_1885: Shewana3_1885 - two component transcriptional regulator (RefSeq), at 2,232,142 to 2,232,801 _1885 Shewana3_1886: Shewana3_1886 - ATPase domain-containing protein (RefSeq), at 2,232,915 to 2,234,309 _1886 Position (kb) 2231 2232 2233Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2230.250 kb on + strand, within Shewana3_1883at 2230.323 kb on + strand, within Shewana3_1883at 2230.333 kb on + strand, within Shewana3_1883at 2230.341 kb on - strand, within Shewana3_1883at 2230.341 kb on - strand, within Shewana3_1883at 2230.361 kb on + strand, within Shewana3_1883at 2230.406 kb on + strand, within Shewana3_1883at 2230.730 kb on + strand, within Shewana3_1883at 2230.730 kb on + strand, within Shewana3_1883at 2230.840 kb on - strand, within Shewana3_1883at 2230.933 kb on - strand, within Shewana3_1883at 2230.964 kb on - strand, within Shewana3_1883at 2231.073 kb on + strandat 2231.106 kb on - strandat 2231.113 kb on + strandat 2231.221 kb on - strandat 2231.508 kb on + strand, within Shewana3_1884at 2231.620 kb on - strand, within Shewana3_1884at 2231.679 kb on + strand, within Shewana3_1884at 2231.877 kb on - strand, within Shewana3_1884at 2232.065 kb on + strandat 2232.132 kb on + strandat 2232.192 kb on - strandat 2232.231 kb on + strand, within Shewana3_1885at 2232.236 kb on - strand, within Shewana3_1885at 2232.350 kb on - strand, within Shewana3_1885at 2232.658 kb on + strand, within Shewana3_1885at 2232.744 kb on - strandat 2232.761 kb on - strandat 2232.845 kb on + strandat 2232.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,230,250 + Shewana3_1883 0.35 +1.4
2,230,323 + Shewana3_1883 0.40 -1.9
2,230,333 + Shewana3_1883 0.41 -1.4
2,230,341 - Shewana3_1883 0.41 +2.4
2,230,341 - Shewana3_1883 0.41 +2.2
2,230,361 + Shewana3_1883 0.43 +2.2
2,230,406 + Shewana3_1883 0.46 +2.2
2,230,730 + Shewana3_1883 0.70 -1.6
2,230,730 + Shewana3_1883 0.70 +0.6
2,230,840 - Shewana3_1883 0.78 +0.5
2,230,933 - Shewana3_1883 0.85 +0.6
2,230,964 - Shewana3_1883 0.88 +1.0
2,231,073 + -2.4
2,231,106 - -1.1
2,231,113 + -0.1
2,231,221 - +0.7
2,231,508 + Shewana3_1884 0.31 -0.0
2,231,620 - Shewana3_1884 0.43 +2.2
2,231,679 + Shewana3_1884 0.50 -1.2
2,231,877 - Shewana3_1884 0.72 +1.6
2,232,065 + -0.3
2,232,132 + -0.2
2,232,192 - +1.2
2,232,231 + Shewana3_1885 0.13 +1.2
2,232,236 - Shewana3_1885 0.14 +0.1
2,232,350 - Shewana3_1885 0.32 -0.2
2,232,658 + Shewana3_1885 0.78 -2.9
2,232,744 - +2.6
2,232,761 - -0.0
2,232,845 + -0.6
2,232,930 + -2.4

Or see this region's nucleotide sequence