Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1882
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,228,514 | - | Shewana3_1880 | 0.88 | +0.2 | |
2,229,246 | + | Shewana3_1881 | 0.54 | +0.8 | |
2,229,538 | - | Shewana3_1882 | 0.31 | -0.3 | |
2,229,880 | - | +2.6 | |||
2,229,880 | - | +3.2 | |||
2,229,912 | + | +1.8 | |||
2,229,992 | - | Shewana3_1883 | 0.15 | +1.4 | |
2,230,147 | + | Shewana3_1883 | 0.27 | +1.6 | |
2,230,172 | - | Shewana3_1883 | 0.29 | +2.2 | |
2,230,250 | + | Shewana3_1883 | 0.35 | +1.4 | |
2,230,323 | + | Shewana3_1883 | 0.40 | -1.9 | |
2,230,333 | + | Shewana3_1883 | 0.41 | -1.4 | |
2,230,341 | - | Shewana3_1883 | 0.41 | +2.4 | |
2,230,341 | - | Shewana3_1883 | 0.41 | +2.2 | |
2,230,361 | + | Shewana3_1883 | 0.43 | +2.2 | |
2,230,406 | + | Shewana3_1883 | 0.46 | +2.2 |
Or see this region's nucleotide sequence