Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1862

Experiment: Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1861 and Shewana3_1862 are separated by 500 nucleotidesShewana3_1862 and pheS are separated by 434 nucleotides Shewana3_1861: Shewana3_1861 - TonB-dependent receptor (RefSeq), at 2,202,821 to 2,204,782 _1861 Shewana3_1862: Shewana3_1862 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,205,283 to 2,206,800 _1862 Shewana3_1863: pheS - phenylalanyl-tRNA synthetase subunit alpha (RefSeq), at 2,207,235 to 2,208,254 pheS Position (kb) 2205 2206 2207Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2204.324 kb on + strand, within Shewana3_1861at 2204.401 kb on - strand, within Shewana3_1861at 2204.540 kb on - strand, within Shewana3_1861at 2204.540 kb on - strand, within Shewana3_1861at 2204.961 kb on + strandat 2204.969 kb on - strandat 2204.969 kb on - strandat 2204.969 kb on - strandat 2204.969 kb on - strandat 2205.289 kb on - strandat 2205.296 kb on - strandat 2205.307 kb on - strandat 2205.354 kb on - strandat 2206.042 kb on + strand, within Shewana3_1862at 2206.042 kb on + strand, within Shewana3_1862at 2206.050 kb on - strand, within Shewana3_1862at 2206.050 kb on - strand, within Shewana3_1862at 2206.219 kb on - strand, within Shewana3_1862at 2207.073 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
remove
2,204,324 + Shewana3_1861 0.77 +1.0
2,204,401 - Shewana3_1861 0.81 -0.1
2,204,540 - Shewana3_1861 0.88 +0.7
2,204,540 - Shewana3_1861 0.88 -1.6
2,204,961 + -1.0
2,204,969 - +1.4
2,204,969 - +3.2
2,204,969 - +4.2
2,204,969 - +0.7
2,205,289 - +0.1
2,205,296 - -1.7
2,205,307 - -1.8
2,205,354 - -1.0
2,206,042 + Shewana3_1862 0.50 -0.4
2,206,042 + Shewana3_1862 0.50 -0.1
2,206,050 - Shewana3_1862 0.51 +4.6
2,206,050 - Shewana3_1862 0.51 -1.0
2,206,219 - Shewana3_1862 0.62 +1.5
2,207,073 + +1.4

Or see this region's nucleotide sequence