Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1853
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,193,894 | - | Shewana3_1852 | 0.29 | -0.9 | |
2,194,184 | + | Shewana3_1852 | 0.53 | -1.0 | |
2,194,252 | + | Shewana3_1852 | 0.58 | +1.6 | |
2,194,252 | + | Shewana3_1852 | 0.58 | +0.3 | |
2,194,260 | - | Shewana3_1852 | 0.59 | -0.1 | |
2,194,567 | + | Shewana3_1852 | 0.84 | -0.1 | |
2,194,647 | - | +0.5 | |||
2,194,654 | - | +0.9 | |||
2,194,721 | + | +0.9 | |||
2,194,729 | - | +0.2 | |||
2,194,749 | - | +0.7 | |||
2,194,797 | - | -0.8 | |||
2,194,798 | - | -0.1 | |||
2,195,272 | + | hisD | Shewana3_1853 | 0.35 | +0.0 |
2,195,369 | - | hisD | Shewana3_1853 | 0.42 | +0.1 |
2,195,825 | + | hisD | Shewana3_1853 | 0.77 | -0.4 |
2,195,825 | + | hisD | Shewana3_1853 | 0.77 | -1.0 |
2,195,924 | - | hisD | Shewana3_1853 | 0.85 | -0.6 |
2,196,027 | - | -0.8 | |||
2,196,195 | - | -1.6 | |||
2,196,195 | - | +0.5 | |||
2,196,195 | - | -1.6 | |||
2,196,380 | + | hisG | Shewana3_1854 | 0.28 | +4.2 |
2,196,380 | + | hisG | Shewana3_1854 | 0.28 | +2.6 |
2,196,398 | - | hisG | Shewana3_1854 | 0.30 | -1.1 |
2,196,444 | - | hisG | Shewana3_1854 | 0.35 | +0.3 |
2,196,446 | + | hisG | Shewana3_1854 | 0.36 | -0.3 |
2,196,475 | + | hisG | Shewana3_1854 | 0.39 | +0.2 |
2,196,966 | - | +1.9 | |||
2,196,996 | + | +0.9 | |||
2,197,026 | + | +0.2 |
Or see this region's nucleotide sequence