Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1842 and Shewana3_1843 are separated by 152 nucleotides Shewana3_1843 and Shewana3_1844 are separated by 24 nucleotides Shewana3_1844 and Shewana3_1845 are separated by 13 nucleotides Shewana3_1845 and Shewana3_1846 are separated by 257 nucleotides
Shewana3_1842: Shewana3_1842 - hypothetical protein (RefSeq), at 2,182,927 to 2,183,268
_1842
Shewana3_1843: Shewana3_1843 - hypothetical protein (RefSeq), at 2,183,421 to 2,183,771
_1843
Shewana3_1844: Shewana3_1844 - hypothetical protein (RefSeq), at 2,183,796 to 2,183,996
_1844
Shewana3_1845: Shewana3_1845 - hypothetical protein (RefSeq), at 2,184,010 to 2,187,216
_1845
Shewana3_1846: Shewana3_1846 - aromatic amino acid transporter (RefSeq), at 2,187,474 to 2,188,661
_1846
Position (kb)
2184
2185
2186
2187
2188 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2183.188 kb on - strand, within Shewana3_1842 at 2183.197 kb on + strand, within Shewana3_1842 at 2183.253 kb on + strand at 2183.598 kb on - strand, within Shewana3_1843 at 2184.517 kb on + strand, within Shewana3_1845 at 2184.524 kb on + strand, within Shewana3_1845 at 2184.567 kb on - strand, within Shewana3_1845 at 2184.672 kb on + strand, within Shewana3_1845 at 2184.763 kb on + strand, within Shewana3_1845 at 2185.210 kb on - strand, within Shewana3_1845 at 2185.332 kb on + strand, within Shewana3_1845 at 2185.370 kb on + strand, within Shewana3_1845 at 2185.500 kb on + strand, within Shewana3_1845 at 2185.551 kb on + strand, within Shewana3_1845 at 2185.552 kb on + strand, within Shewana3_1845 at 2185.585 kb on + strand, within Shewana3_1845 at 2185.712 kb on + strand, within Shewana3_1845 at 2185.906 kb on + strand, within Shewana3_1845 at 2185.981 kb on - strand, within Shewana3_1845 at 2186.099 kb on - strand, within Shewana3_1845 at 2186.516 kb on + strand, within Shewana3_1845 at 2186.618 kb on - strand, within Shewana3_1845 at 2186.738 kb on - strand, within Shewana3_1845 at 2186.788 kb on - strand, within Shewana3_1845 at 2186.939 kb on + strand at 2186.996 kb on - strand at 2187.242 kb on - strand at 2187.331 kb on - strand at 2187.376 kb on + strand at 2187.376 kb on + strand at 2187.384 kb on - strand at 2187.486 kb on - strand at 2187.521 kb on - strand at 2187.596 kb on + strand, within Shewana3_1846 at 2187.690 kb on - strand, within Shewana3_1846 at 2187.769 kb on - strand, within Shewana3_1846 at 2187.791 kb on + strand, within Shewana3_1846 at 2187.791 kb on + strand, within Shewana3_1846 at 2188.081 kb on - strand, within Shewana3_1846 at 2188.178 kb on + strand, within Shewana3_1846 at 2188.178 kb on + strand, within Shewana3_1846
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,183,188 - Shewana3_1842 0.76 +0.9 2,183,197 + Shewana3_1842 0.79 +0.6 2,183,253 + +1.0 2,183,598 - Shewana3_1843 0.50 +1.9 2,184,517 + Shewana3_1845 0.16 +3.4 2,184,524 + Shewana3_1845 0.16 +3.2 2,184,567 - Shewana3_1845 0.17 +0.2 2,184,672 + Shewana3_1845 0.21 +3.2 2,184,763 + Shewana3_1845 0.23 +0.6 2,185,210 - Shewana3_1845 0.37 +1.0 2,185,332 + Shewana3_1845 0.41 -0.6 2,185,370 + Shewana3_1845 0.42 +0.4 2,185,500 + Shewana3_1845 0.46 +1.4 2,185,551 + Shewana3_1845 0.48 -0.1 2,185,552 + Shewana3_1845 0.48 -0.9 2,185,585 + Shewana3_1845 0.49 -0.6 2,185,712 + Shewana3_1845 0.53 +1.9 2,185,906 + Shewana3_1845 0.59 +0.4 2,185,981 - Shewana3_1845 0.61 +4.2 2,186,099 - Shewana3_1845 0.65 +2.8 2,186,516 + Shewana3_1845 0.78 +2.2 2,186,618 - Shewana3_1845 0.81 +4.2 2,186,738 - Shewana3_1845 0.85 +0.7 2,186,788 - Shewana3_1845 0.87 +1.9 2,186,939 + +1.9 2,186,996 - +2.6 2,187,242 - -0.3 2,187,331 - +1.4 2,187,376 + +0.9 2,187,376 + +0.7 2,187,384 - +2.6 2,187,486 - +1.2 2,187,521 - -0.8 2,187,596 + Shewana3_1846 0.10 +2.6 2,187,690 - Shewana3_1846 0.18 +3.0 2,187,769 - Shewana3_1846 0.25 +1.4 2,187,791 + Shewana3_1846 0.27 +2.6 2,187,791 + Shewana3_1846 0.27 +2.9 2,188,081 - Shewana3_1846 0.51 -1.1 2,188,178 + Shewana3_1846 0.59 +1.4 2,188,178 + Shewana3_1846 0.59 +3.6
Or see this region's nucleotide sequence