Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1835 and Shewana3_1836 are separated by 87 nucleotides Shewana3_1836 and Shewana3_1837 are separated by 195 nucleotides
Shewana3_1835: Shewana3_1835 - FAD dependent oxidoreductase (RefSeq), at 2,176,226 to 2,177,515
_1835
Shewana3_1836: Shewana3_1836 - LysR family transcriptional regulator (RefSeq), at 2,177,603 to 2,178,484
_1836
Shewana3_1837: Shewana3_1837 - alcohol dehydrogenase (RefSeq), at 2,178,680 to 2,179,819
_1837
Position (kb)
2177
2178
2179 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2176.619 kb on + strand, within Shewana3_1835 at 2176.698 kb on + strand, within Shewana3_1835 at 2176.725 kb on + strand, within Shewana3_1835 at 2176.914 kb on - strand, within Shewana3_1835 at 2176.973 kb on - strand, within Shewana3_1835 at 2177.215 kb on + strand, within Shewana3_1835 at 2177.215 kb on + strand, within Shewana3_1835 at 2177.230 kb on - strand, within Shewana3_1835 at 2177.467 kb on - strand at 2177.493 kb on - strand at 2177.676 kb on - strand at 2177.793 kb on + strand, within Shewana3_1836 at 2177.809 kb on - strand, within Shewana3_1836 at 2178.008 kb on + strand, within Shewana3_1836 at 2178.253 kb on + strand, within Shewana3_1836 at 2178.301 kb on + strand, within Shewana3_1836 at 2178.383 kb on + strand, within Shewana3_1836 at 2178.403 kb on + strand at 2178.479 kb on - strand at 2178.624 kb on + strand at 2178.631 kb on - strand at 2178.923 kb on + strand, within Shewana3_1837 at 2179.008 kb on + strand, within Shewana3_1837 at 2179.042 kb on + strand, within Shewana3_1837 at 2179.223 kb on + strand, within Shewana3_1837 at 2179.231 kb on - strand, within Shewana3_1837 at 2179.407 kb on + strand, within Shewana3_1837
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,176,619 + Shewana3_1835 0.30 +0.7 2,176,698 + Shewana3_1835 0.37 +0.0 2,176,725 + Shewana3_1835 0.39 +2.1 2,176,914 - Shewana3_1835 0.53 +1.9 2,176,973 - Shewana3_1835 0.58 +1.2 2,177,215 + Shewana3_1835 0.77 -0.6 2,177,215 + Shewana3_1835 0.77 +1.5 2,177,230 - Shewana3_1835 0.78 +0.2 2,177,467 - +2.6 2,177,493 - +2.6 2,177,676 - +0.5 2,177,793 + Shewana3_1836 0.22 +0.4 2,177,809 - Shewana3_1836 0.23 +0.7 2,178,008 + Shewana3_1836 0.46 +1.6 2,178,253 + Shewana3_1836 0.74 +4.0 2,178,301 + Shewana3_1836 0.79 -0.4 2,178,383 + Shewana3_1836 0.88 -0.9 2,178,403 + +1.0 2,178,479 - +0.8 2,178,624 + +0.3 2,178,631 - +2.6 2,178,923 + Shewana3_1837 0.21 +0.5 2,179,008 + Shewana3_1837 0.29 -1.0 2,179,042 + Shewana3_1837 0.32 -1.5 2,179,223 + Shewana3_1837 0.48 +0.4 2,179,231 - Shewana3_1837 0.48 +4.8 2,179,407 + Shewana3_1837 0.64 -1.3
Or see this region's nucleotide sequence