Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1821 and Shewana3_1822 are separated by 9 nucleotides Shewana3_1822 and Shewana3_1823 are separated by 214 nucleotides Shewana3_1823 and Shewana3_1824 are separated by 14 nucleotides
Shewana3_1821: Shewana3_1821 - hypothetical protein (RefSeq), at 2,153,023 to 2,155,062
_1821
Shewana3_1822: Shewana3_1822 - zeta toxin family protein (RefSeq), at 2,155,072 to 2,155,788
_1822
Shewana3_1823: Shewana3_1823 - hypothetical protein (RefSeq), at 2,156,003 to 2,157,856
_1823
Shewana3_1824: Shewana3_1824 - glutathione synthase (RefSeq), at 2,157,871 to 2,159,871
_1824
Position (kb)
2156
2157
2158 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2155.385 kb on - strand, within Shewana3_1822 at 2156.381 kb on - strand, within Shewana3_1823 at 2156.484 kb on + strand, within Shewana3_1823 at 2156.492 kb on - strand, within Shewana3_1823 at 2156.515 kb on - strand, within Shewana3_1823 at 2156.754 kb on - strand, within Shewana3_1823 at 2156.827 kb on + strand at 2156.839 kb on - strand, within Shewana3_1823 at 2156.862 kb on + strand, within Shewana3_1823 at 2156.909 kb on + strand, within Shewana3_1823 at 2156.995 kb on + strand, within Shewana3_1823 at 2157.019 kb on + strand, within Shewana3_1823 at 2157.224 kb on + strand, within Shewana3_1823 at 2157.290 kb on + strand, within Shewana3_1823 at 2157.342 kb on - strand, within Shewana3_1823 at 2157.436 kb on + strand, within Shewana3_1823 at 2157.672 kb on - strand at 2157.672 kb on - strand at 2157.688 kb on + strand at 2157.926 kb on - strand at 2158.197 kb on + strand, within Shewana3_1824 at 2158.281 kb on + strand, within Shewana3_1824 at 2158.547 kb on - strand, within Shewana3_1824 at 2158.622 kb on + strand, within Shewana3_1824 at 2158.766 kb on + strand, within Shewana3_1824 at 2158.774 kb on - strand, within Shewana3_1824 at 2158.813 kb on + strand, within Shewana3_1824 at 2158.832 kb on - strand, within Shewana3_1824
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,155,385 - Shewana3_1822 0.44 +4.2 2,156,381 - Shewana3_1823 0.20 +1.4 2,156,484 + Shewana3_1823 0.26 +2.6 2,156,492 - Shewana3_1823 0.26 +2.8 2,156,515 - Shewana3_1823 0.28 +2.2 2,156,754 - Shewana3_1823 0.41 +1.4 2,156,827 + +4.2 2,156,839 - Shewana3_1823 0.45 +3.2 2,156,862 + Shewana3_1823 0.46 +3.2 2,156,909 + Shewana3_1823 0.49 +1.2 2,156,995 + Shewana3_1823 0.54 +1.9 2,157,019 + Shewana3_1823 0.55 +2.6 2,157,224 + Shewana3_1823 0.66 +1.0 2,157,290 + Shewana3_1823 0.69 +4.2 2,157,342 - Shewana3_1823 0.72 -0.6 2,157,436 + Shewana3_1823 0.77 +3.2 2,157,672 - +1.3 2,157,672 - +2.6 2,157,688 + +2.6 2,157,926 - +0.9 2,158,197 + Shewana3_1824 0.16 +2.6 2,158,281 + Shewana3_1824 0.20 +2.2 2,158,547 - Shewana3_1824 0.34 +0.4 2,158,622 + Shewana3_1824 0.38 +4.2 2,158,766 + Shewana3_1824 0.45 +4.2 2,158,774 - Shewana3_1824 0.45 +1.0 2,158,813 + Shewana3_1824 0.47 +2.6 2,158,832 - Shewana3_1824 0.48 +0.2
Or see this region's nucleotide sequence