Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1688
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,982,187 | - | Shewana3_1687 | 0.12 | +4.1 | |
1,982,550 | + | Shewana3_1687 | 0.50 | -2.3 | |
1,982,593 | + | Shewana3_1687 | 0.55 | +0.4 | |
1,982,634 | + | Shewana3_1687 | 0.59 | +4.1 | |
1,982,837 | + | Shewana3_1687 | 0.81 | -0.1 | |
1,982,969 | + | +3.1 | |||
1,982,969 | + | -0.9 | |||
1,982,971 | - | -0.3 | |||
1,983,080 | + | +2.5 | |||
1,983,100 | + | +0.4 | |||
1,983,131 | + | -0.3 | |||
1,983,286 | - | Shewana3_1688 | 0.17 | +0.7 | |
1,983,448 | + | Shewana3_1688 | 0.36 | -1.5 | |
1,983,670 | - | Shewana3_1688 | 0.61 | +1.7 | |
1,983,951 | - | +0.4 | |||
1,983,982 | - | -1.2 | |||
1,984,137 | + | Shewana3_1689 | 0.33 | +0.6 | |
1,984,145 | - | Shewana3_1689 | 0.35 | +2.1 | |
1,984,197 | + | Shewana3_1689 | 0.47 | +0.6 | |
1,984,337 | + | Shewana3_1689 | 0.82 | -0.8 | |
1,984,382 | + | -0.4 | |||
1,984,672 | - | -1.6 |
Or see this region's nucleotide sequence