Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1685

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1683 and Shewana3_1684 are separated by 199 nucleotidesShewana3_1684 and Shewana3_1685 are separated by 71 nucleotidesShewana3_1685 and Shewana3_1686 are separated by 152 nucleotides Shewana3_1683: Shewana3_1683 - LysR family transcriptional regulator (RefSeq), at 1,978,257 to 1,979,156 _1683 Shewana3_1684: Shewana3_1684 - hypothetical protein (RefSeq), at 1,979,356 to 1,979,835 _1684 Shewana3_1685: Shewana3_1685 - extradiol ring-cleavage dioxygenase III subunit B (RefSeq), at 1,979,907 to 1,980,716 _1685 Shewana3_1686: Shewana3_1686 - 1,4-dihydroxy-2-naphtoate prenyltransferase (RefSeq), at 1,980,869 to 1,981,744 _1686 Position (kb) 1979 1980 1981Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1979.045 kb on + strand, within Shewana3_1683at 1979.053 kb on - strand, within Shewana3_1683at 1979.152 kb on - strandat 1979.261 kb on - strandat 1979.264 kb on - strandat 1979.328 kb on - strandat 1979.335 kb on - strandat 1979.385 kb on + strandat 1979.428 kb on + strand, within Shewana3_1684at 1979.436 kb on - strand, within Shewana3_1684at 1980.050 kb on - strand, within Shewana3_1685at 1980.271 kb on + strand, within Shewana3_1685at 1980.468 kb on - strand, within Shewana3_1685at 1980.468 kb on - strand, within Shewana3_1685at 1980.622 kb on + strand, within Shewana3_1685at 1980.904 kb on - strandat 1981.229 kb on + strand, within Shewana3_1686at 1981.242 kb on + strand, within Shewana3_1686at 1981.444 kb on + strand, within Shewana3_1686at 1981.494 kb on - strand, within Shewana3_1686at 1981.618 kb on + strand, within Shewana3_1686

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,979,045 + Shewana3_1683 0.88 -0.3
1,979,053 - Shewana3_1683 0.88 +0.7
1,979,152 - +1.6
1,979,261 - +3.1
1,979,264 - +1.7
1,979,328 - -0.8
1,979,335 - -1.2
1,979,385 + +0.2
1,979,428 + Shewana3_1684 0.15 -2.5
1,979,436 - Shewana3_1684 0.17 +1.8
1,980,050 - Shewana3_1685 0.18 +4.1
1,980,271 + Shewana3_1685 0.45 -0.4
1,980,468 - Shewana3_1685 0.69 +0.6
1,980,468 - Shewana3_1685 0.69 +0.7
1,980,622 + Shewana3_1685 0.88 -0.4
1,980,904 - +0.2
1,981,229 + Shewana3_1686 0.41 +2.5
1,981,242 + Shewana3_1686 0.43 +1.5
1,981,444 + Shewana3_1686 0.66 +3.1
1,981,494 - Shewana3_1686 0.71 +2.1
1,981,618 + Shewana3_1686 0.86 +3.1

Or see this region's nucleotide sequence