Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1679

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1678 and Shewana3_1679 are separated by 10 nucleotidesShewana3_1679 and Shewana3_1680 are separated by 254 nucleotides Shewana3_1678: Shewana3_1678 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,973,404 to 1,975,521 _1678 Shewana3_1679: Shewana3_1679 - hypothetical protein (RefSeq), at 1,975,532 to 1,975,996 _1679 Shewana3_1680: Shewana3_1680 - hypothetical protein (RefSeq), at 1,976,251 to 1,976,961 _1680 Position (kb) 1975 1976Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1974.781 kb on - strand, within Shewana3_1678at 1974.917 kb on - strand, within Shewana3_1678at 1975.067 kb on + strand, within Shewana3_1678at 1975.091 kb on - strand, within Shewana3_1678at 1975.220 kb on - strand, within Shewana3_1678at 1975.249 kb on + strand, within Shewana3_1678at 1975.251 kb on + strand, within Shewana3_1678at 1975.325 kb on + strandat 1975.626 kb on - strand, within Shewana3_1679at 1975.630 kb on + strand, within Shewana3_1679at 1975.638 kb on - strand, within Shewana3_1679at 1975.638 kb on - strand, within Shewana3_1679at 1975.653 kb on - strand, within Shewana3_1679at 1975.660 kb on + strand, within Shewana3_1679at 1975.704 kb on + strand, within Shewana3_1679at 1975.764 kb on - strand, within Shewana3_1679at 1975.765 kb on - strand, within Shewana3_1679at 1975.897 kb on + strand, within Shewana3_1679at 1975.958 kb on + strandat 1976.003 kb on + strandat 1976.222 kb on - strandat 1976.254 kb on - strandat 1976.256 kb on - strandat 1976.282 kb on + strandat 1976.417 kb on - strand, within Shewana3_1680at 1976.424 kb on - strand, within Shewana3_1680at 1976.469 kb on - strand, within Shewana3_1680at 1976.528 kb on - strand, within Shewana3_1680at 1976.546 kb on + strand, within Shewana3_1680at 1976.677 kb on + strand, within Shewana3_1680at 1976.736 kb on - strand, within Shewana3_1680

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,974,781 - Shewana3_1678 0.65 +1.2
1,974,917 - Shewana3_1678 0.71 +2.0
1,975,067 + Shewana3_1678 0.79 +0.8
1,975,091 - Shewana3_1678 0.80 +2.4
1,975,220 - Shewana3_1678 0.86 +1.4
1,975,249 + Shewana3_1678 0.87 -1.3
1,975,251 + Shewana3_1678 0.87 -2.4
1,975,325 + -0.2
1,975,626 - Shewana3_1679 0.20 +3.0
1,975,630 + Shewana3_1679 0.21 -2.0
1,975,638 - Shewana3_1679 0.23 -0.8
1,975,638 - Shewana3_1679 0.23 +3.0
1,975,653 - Shewana3_1679 0.26 +0.9
1,975,660 + Shewana3_1679 0.28 -0.6
1,975,704 + Shewana3_1679 0.37 +0.4
1,975,764 - Shewana3_1679 0.50 +0.6
1,975,765 - Shewana3_1679 0.50 +1.4
1,975,897 + Shewana3_1679 0.78 -1.2
1,975,958 + -1.3
1,976,003 + +2.7
1,976,222 - -0.3
1,976,254 - +2.1
1,976,256 - -0.8
1,976,282 + -0.5
1,976,417 - Shewana3_1680 0.23 +4.1
1,976,424 - Shewana3_1680 0.24 -0.5
1,976,469 - Shewana3_1680 0.31 +0.6
1,976,528 - Shewana3_1680 0.39 +1.2
1,976,546 + Shewana3_1680 0.41 +3.1
1,976,677 + Shewana3_1680 0.60 +0.4
1,976,736 - Shewana3_1680 0.68 +2.5

Or see this region's nucleotide sequence