Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1654

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1652 and Shewana3_1653 are separated by 112 nucleotidesShewana3_1653 and bcp are separated by 180 nucleotidesbcp and Shewana3_1655 are separated by 3 nucleotidesShewana3_1655 and Shewana3_1656 are separated by 172 nucleotides Shewana3_1652: Shewana3_1652 - chromosome replication initiation inhibitor protein (RefSeq), at 1,943,259 to 1,944,176 _1652 Shewana3_1653: Shewana3_1653 - lysine exporter protein LysE/YggA (RefSeq), at 1,944,289 to 1,944,903 _1653 Shewana3_1654: bcp - thioredoxin-dependent thiol peroxidase (RefSeq), at 1,945,084 to 1,945,551 bcp Shewana3_1655: Shewana3_1655 - glycine cleavage system transcriptional repressor, putative (RefSeq), at 1,945,555 to 1,946,106 _1655 Shewana3_1656: Shewana3_1656 - dihydrodipicolinate synthase (RefSeq), at 1,946,279 to 1,947,163 _1656 Position (kb) 1945 1946Strain fitness (log2 ratio) -1 0 1 2 3 4at 1944.387 kb on + strand, within Shewana3_1653at 1944.395 kb on - strand, within Shewana3_1653at 1944.466 kb on - strand, within Shewana3_1653at 1944.480 kb on + strand, within Shewana3_1653at 1944.541 kb on - strand, within Shewana3_1653at 1944.638 kb on + strand, within Shewana3_1653at 1945.135 kb on - strand, within bcpat 1945.278 kb on + strand, within bcpat 1945.399 kb on + strand, within bcpat 1945.399 kb on + strand, within bcpat 1945.407 kb on - strand, within bcpat 1945.417 kb on - strand, within bcpat 1945.417 kb on - strand, within bcpat 1945.704 kb on - strand, within Shewana3_1655at 1945.777 kb on - strand, within Shewana3_1655at 1945.788 kb on + strand, within Shewana3_1655at 1945.868 kb on - strand, within Shewana3_1655at 1945.960 kb on - strand, within Shewana3_1655at 1946.143 kb on + strandat 1946.174 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,944,387 + Shewana3_1653 0.16 +0.5
1,944,395 - Shewana3_1653 0.17 +3.0
1,944,466 - Shewana3_1653 0.29 +3.0
1,944,480 + Shewana3_1653 0.31 +1.7
1,944,541 - Shewana3_1653 0.41 +1.1
1,944,638 + Shewana3_1653 0.57 +0.2
1,945,135 - bcp Shewana3_1654 0.11 +0.7
1,945,278 + bcp Shewana3_1654 0.41 -0.7
1,945,399 + bcp Shewana3_1654 0.67 +0.3
1,945,399 + bcp Shewana3_1654 0.67 +4.0
1,945,407 - bcp Shewana3_1654 0.69 -0.1
1,945,417 - bcp Shewana3_1654 0.71 -0.1
1,945,417 - bcp Shewana3_1654 0.71 -0.3
1,945,704 - Shewana3_1655 0.27 -1.0
1,945,777 - Shewana3_1655 0.40 +0.3
1,945,788 + Shewana3_1655 0.42 +0.5
1,945,868 - Shewana3_1655 0.57 -0.4
1,945,960 - Shewana3_1655 0.73 +0.8
1,946,143 + +0.7
1,946,174 + +2.0

Or see this region's nucleotide sequence