Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1649

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1647 and Shewana3_1648 are separated by 47 nucleotidesShewana3_1648 and Shewana3_1649 are separated by 111 nucleotidesShewana3_1649 and Shewana3_1650 are separated by 112 nucleotidesShewana3_1650 and Shewana3_1651 are separated by 208 nucleotides Shewana3_1647: Shewana3_1647 - hypothetical protein (RefSeq), at 1,939,133 to 1,939,513 _1647 Shewana3_1648: Shewana3_1648 - arsenate reductase (RefSeq), at 1,939,561 to 1,939,911 _1648 Shewana3_1649: Shewana3_1649 - peptidase M48, Ste24p (RefSeq), at 1,940,023 to 1,941,492 _1649 Shewana3_1650: Shewana3_1650 - SirA family protein (RefSeq), at 1,941,605 to 1,941,838 _1650 Shewana3_1651: Shewana3_1651 - hypothetical protein (RefSeq), at 1,942,047 to 1,943,147 _1651 Position (kb) 1940 1941 1942Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1939.078 kb on + strandat 1939.162 kb on + strandat 1939.312 kb on + strand, within Shewana3_1647at 1939.394 kb on - strand, within Shewana3_1647at 1939.409 kb on + strand, within Shewana3_1647at 1939.422 kb on + strand, within Shewana3_1647at 1939.465 kb on + strand, within Shewana3_1647at 1939.500 kb on + strandat 1939.851 kb on + strand, within Shewana3_1648at 1939.851 kb on + strand, within Shewana3_1648at 1940.112 kb on - strandat 1940.926 kb on + strand, within Shewana3_1649at 1941.033 kb on + strand, within Shewana3_1649at 1941.048 kb on - strand, within Shewana3_1649at 1941.136 kb on + strand, within Shewana3_1649at 1941.141 kb on - strand, within Shewana3_1649at 1941.371 kb on + strandat 1941.949 kb on + strandat 1941.965 kb on - strandat 1941.971 kb on + strandat 1942.137 kb on + strandat 1942.293 kb on + strand, within Shewana3_1651at 1942.293 kb on + strand, within Shewana3_1651at 1942.423 kb on + strand, within Shewana3_1651

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,939,078 + +4.0
1,939,162 + +2.4
1,939,312 + Shewana3_1647 0.47 +0.2
1,939,394 - Shewana3_1647 0.69 -1.5
1,939,409 + Shewana3_1647 0.72 -0.0
1,939,422 + Shewana3_1647 0.76 +1.2
1,939,465 + Shewana3_1647 0.87 -2.0
1,939,500 + +0.7
1,939,851 + Shewana3_1648 0.83 +2.3
1,939,851 + Shewana3_1648 0.83 +0.4
1,940,112 - +0.2
1,940,926 + Shewana3_1649 0.61 +1.0
1,941,033 + Shewana3_1649 0.69 +0.8
1,941,048 - Shewana3_1649 0.70 -1.3
1,941,136 + Shewana3_1649 0.76 -0.5
1,941,141 - Shewana3_1649 0.76 +1.4
1,941,371 + -0.4
1,941,949 + +0.8
1,941,965 - +3.0
1,941,971 + -0.6
1,942,137 + -1.1
1,942,293 + Shewana3_1651 0.22 +0.1
1,942,293 + Shewana3_1651 0.22 +0.6
1,942,423 + Shewana3_1651 0.34 +4.0

Or see this region's nucleotide sequence