Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1647 and Shewana3_1648 are separated by 47 nucleotides Shewana3_1648 and Shewana3_1649 are separated by 111 nucleotides Shewana3_1649 and Shewana3_1650 are separated by 112 nucleotides Shewana3_1650 and Shewana3_1651 are separated by 208 nucleotides
Shewana3_1647: Shewana3_1647 - hypothetical protein (RefSeq), at 1,939,133 to 1,939,513
_1647
Shewana3_1648: Shewana3_1648 - arsenate reductase (RefSeq), at 1,939,561 to 1,939,911
_1648
Shewana3_1649: Shewana3_1649 - peptidase M48, Ste24p (RefSeq), at 1,940,023 to 1,941,492
_1649
Shewana3_1650: Shewana3_1650 - SirA family protein (RefSeq), at 1,941,605 to 1,941,838
_1650
Shewana3_1651: Shewana3_1651 - hypothetical protein (RefSeq), at 1,942,047 to 1,943,147
_1651
Position (kb)
1940
1941
1942 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1939.078 kb on + strand at 1939.162 kb on + strand at 1939.312 kb on + strand, within Shewana3_1647 at 1939.394 kb on - strand, within Shewana3_1647 at 1939.409 kb on + strand, within Shewana3_1647 at 1939.422 kb on + strand, within Shewana3_1647 at 1939.465 kb on + strand, within Shewana3_1647 at 1939.500 kb on + strand at 1939.851 kb on + strand, within Shewana3_1648 at 1939.851 kb on + strand, within Shewana3_1648 at 1940.112 kb on - strand at 1940.926 kb on + strand, within Shewana3_1649 at 1941.033 kb on + strand, within Shewana3_1649 at 1941.048 kb on - strand, within Shewana3_1649 at 1941.136 kb on + strand, within Shewana3_1649 at 1941.141 kb on - strand, within Shewana3_1649 at 1941.371 kb on + strand at 1941.949 kb on + strand at 1941.965 kb on - strand at 1941.971 kb on + strand at 1942.137 kb on + strand at 1942.293 kb on + strand, within Shewana3_1651 at 1942.293 kb on + strand, within Shewana3_1651 at 1942.423 kb on + strand, within Shewana3_1651
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,939,078 + +4.0 1,939,162 + +2.4 1,939,312 + Shewana3_1647 0.47 +0.2 1,939,394 - Shewana3_1647 0.69 -1.5 1,939,409 + Shewana3_1647 0.72 -0.0 1,939,422 + Shewana3_1647 0.76 +1.2 1,939,465 + Shewana3_1647 0.87 -2.0 1,939,500 + +0.7 1,939,851 + Shewana3_1648 0.83 +2.3 1,939,851 + Shewana3_1648 0.83 +0.4 1,940,112 - +0.2 1,940,926 + Shewana3_1649 0.61 +1.0 1,941,033 + Shewana3_1649 0.69 +0.8 1,941,048 - Shewana3_1649 0.70 -1.3 1,941,136 + Shewana3_1649 0.76 -0.5 1,941,141 - Shewana3_1649 0.76 +1.4 1,941,371 + -0.4 1,941,949 + +0.8 1,941,965 - +3.0 1,941,971 + -0.6 1,942,137 + -1.1 1,942,293 + Shewana3_1651 0.22 +0.1 1,942,293 + Shewana3_1651 0.22 +0.6 1,942,423 + Shewana3_1651 0.34 +4.0
Or see this region's nucleotide sequence