Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1607

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1605 and Shewana3_1606 are separated by 107 nucleotidesShewana3_1606 and Shewana3_1607 are separated by 74 nucleotidesShewana3_1607 and Shewana3_R0077 are separated by 206 nucleotidesShewana3_R0077 and Shewana3_R0078 are separated by 669 nucleotides Shewana3_1605: Shewana3_1605 - ribosome modulation factor (RefSeq), at 1,884,935 to 1,885,111 _1605 Shewana3_1606: Shewana3_1606 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase (RefSeq), at 1,885,219 to 1,885,734 _1606 Shewana3_1607: Shewana3_1607 - ATP-dependent protease (RefSeq), at 1,885,809 to 1,887,557 _1607 Shewana3_R0077: Shewana3_R0077 - tRNA-Ser (RefSeq), at 1,887,764 to 1,887,854 _R0077 Shewana3_R0078: Shewana3_R0078 - tRNA-Ser (RefSeq), at 1,888,524 to 1,888,614 _R0078 Position (kb) 1885 1886 1887 1888Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1884.918 kb on + strandat 1885.013 kb on - strand, within Shewana3_1605at 1885.051 kb on + strand, within Shewana3_1605at 1885.150 kb on + strandat 1885.215 kb on - strandat 1885.320 kb on - strand, within Shewana3_1606at 1885.386 kb on - strand, within Shewana3_1606at 1885.417 kb on - strand, within Shewana3_1606at 1885.417 kb on - strand, within Shewana3_1606at 1885.434 kb on - strand, within Shewana3_1606at 1886.262 kb on - strand, within Shewana3_1607at 1886.323 kb on + strand, within Shewana3_1607at 1886.683 kb on + strand, within Shewana3_1607at 1886.683 kb on + strand, within Shewana3_1607at 1886.691 kb on - strand, within Shewana3_1607at 1886.691 kb on - strand, within Shewana3_1607at 1886.691 kb on - strand, within Shewana3_1607at 1886.734 kb on - strand, within Shewana3_1607at 1886.753 kb on + strand, within Shewana3_1607at 1886.824 kb on + strand, within Shewana3_1607at 1886.946 kb on + strand, within Shewana3_1607at 1886.954 kb on - strand, within Shewana3_1607at 1887.095 kb on - strand, within Shewana3_1607at 1887.115 kb on - strand, within Shewana3_1607at 1887.312 kb on + strand, within Shewana3_1607at 1887.493 kb on - strandat 1887.613 kb on - strandat 1887.632 kb on - strandat 1888.036 kb on - strandat 1888.127 kb on + strandat 1888.202 kb on - strandat 1888.285 kb on + strandat 1888.302 kb on - strandat 1888.311 kb on + strandat 1888.312 kb on + strandat 1888.312 kb on + strandat 1888.327 kb on + strandat 1888.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,884,918 + -0.9
1,885,013 - Shewana3_1605 0.44 +0.5
1,885,051 + Shewana3_1605 0.66 -1.5
1,885,150 + -0.5
1,885,215 - +0.2
1,885,320 - Shewana3_1606 0.20 +0.3
1,885,386 - Shewana3_1606 0.32 -0.3
1,885,417 - Shewana3_1606 0.38 +0.2
1,885,417 - Shewana3_1606 0.38 +1.1
1,885,434 - Shewana3_1606 0.42 +0.1
1,886,262 - Shewana3_1607 0.26 -0.1
1,886,323 + Shewana3_1607 0.29 +3.0
1,886,683 + Shewana3_1607 0.50 +0.9
1,886,683 + Shewana3_1607 0.50 -0.0
1,886,691 - Shewana3_1607 0.50 -0.9
1,886,691 - Shewana3_1607 0.50 -0.6
1,886,691 - Shewana3_1607 0.50 -0.7
1,886,734 - Shewana3_1607 0.53 -1.6
1,886,753 + Shewana3_1607 0.54 +0.5
1,886,824 + Shewana3_1607 0.58 +1.4
1,886,946 + Shewana3_1607 0.65 +1.7
1,886,954 - Shewana3_1607 0.65 -0.0
1,887,095 - Shewana3_1607 0.74 +0.7
1,887,115 - Shewana3_1607 0.75 -0.8
1,887,312 + Shewana3_1607 0.86 -1.0
1,887,493 - +0.5
1,887,613 - +0.8
1,887,632 - -2.3
1,888,036 - -1.3
1,888,127 + +0.5
1,888,202 - -0.7
1,888,285 + +0.4
1,888,302 - +1.7
1,888,311 + -0.7
1,888,312 + -1.3
1,888,312 + -0.8
1,888,327 + -1.1
1,888,337 - +3.0

Or see this region's nucleotide sequence