Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1605 and Shewana3_1606 are separated by 107 nucleotides Shewana3_1606 and Shewana3_1607 are separated by 74 nucleotides Shewana3_1607 and Shewana3_R0077 are separated by 206 nucleotides Shewana3_R0077 and Shewana3_R0078 are separated by 669 nucleotides
Shewana3_1605: Shewana3_1605 - ribosome modulation factor (RefSeq), at 1,884,935 to 1,885,111
_1605
Shewana3_1606: Shewana3_1606 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase (RefSeq), at 1,885,219 to 1,885,734
_1606
Shewana3_1607: Shewana3_1607 - ATP-dependent protease (RefSeq), at 1,885,809 to 1,887,557
_1607
Shewana3_R0077: Shewana3_R0077 - tRNA-Ser (RefSeq), at 1,887,764 to 1,887,854
_R0077
Shewana3_R0078: Shewana3_R0078 - tRNA-Ser (RefSeq), at 1,888,524 to 1,888,614
_R0078
Position (kb)
1885
1886
1887
1888 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1884.918 kb on + strand at 1885.013 kb on - strand, within Shewana3_1605 at 1885.051 kb on + strand, within Shewana3_1605 at 1885.150 kb on + strand at 1885.215 kb on - strand at 1885.320 kb on - strand, within Shewana3_1606 at 1885.386 kb on - strand, within Shewana3_1606 at 1885.417 kb on - strand, within Shewana3_1606 at 1885.417 kb on - strand, within Shewana3_1606 at 1885.434 kb on - strand, within Shewana3_1606 at 1886.262 kb on - strand, within Shewana3_1607 at 1886.323 kb on + strand, within Shewana3_1607 at 1886.683 kb on + strand, within Shewana3_1607 at 1886.683 kb on + strand, within Shewana3_1607 at 1886.691 kb on - strand, within Shewana3_1607 at 1886.691 kb on - strand, within Shewana3_1607 at 1886.691 kb on - strand, within Shewana3_1607 at 1886.734 kb on - strand, within Shewana3_1607 at 1886.753 kb on + strand, within Shewana3_1607 at 1886.824 kb on + strand, within Shewana3_1607 at 1886.946 kb on + strand, within Shewana3_1607 at 1886.954 kb on - strand, within Shewana3_1607 at 1887.095 kb on - strand, within Shewana3_1607 at 1887.115 kb on - strand, within Shewana3_1607 at 1887.312 kb on + strand, within Shewana3_1607 at 1887.493 kb on - strand at 1887.613 kb on - strand at 1887.632 kb on - strand at 1888.036 kb on - strand at 1888.127 kb on + strand at 1888.202 kb on - strand at 1888.285 kb on + strand at 1888.302 kb on - strand at 1888.311 kb on + strand at 1888.312 kb on + strand at 1888.312 kb on + strand at 1888.327 kb on + strand at 1888.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,884,918 + -0.9 1,885,013 - Shewana3_1605 0.44 +0.5 1,885,051 + Shewana3_1605 0.66 -1.5 1,885,150 + -0.5 1,885,215 - +0.2 1,885,320 - Shewana3_1606 0.20 +0.3 1,885,386 - Shewana3_1606 0.32 -0.3 1,885,417 - Shewana3_1606 0.38 +0.2 1,885,417 - Shewana3_1606 0.38 +1.1 1,885,434 - Shewana3_1606 0.42 +0.1 1,886,262 - Shewana3_1607 0.26 -0.1 1,886,323 + Shewana3_1607 0.29 +3.0 1,886,683 + Shewana3_1607 0.50 +0.9 1,886,683 + Shewana3_1607 0.50 -0.0 1,886,691 - Shewana3_1607 0.50 -0.9 1,886,691 - Shewana3_1607 0.50 -0.6 1,886,691 - Shewana3_1607 0.50 -0.7 1,886,734 - Shewana3_1607 0.53 -1.6 1,886,753 + Shewana3_1607 0.54 +0.5 1,886,824 + Shewana3_1607 0.58 +1.4 1,886,946 + Shewana3_1607 0.65 +1.7 1,886,954 - Shewana3_1607 0.65 -0.0 1,887,095 - Shewana3_1607 0.74 +0.7 1,887,115 - Shewana3_1607 0.75 -0.8 1,887,312 + Shewana3_1607 0.86 -1.0 1,887,493 - +0.5 1,887,613 - +0.8 1,887,632 - -2.3 1,888,036 - -1.3 1,888,127 + +0.5 1,888,202 - -0.7 1,888,285 + +0.4 1,888,302 - +1.7 1,888,311 + -0.7 1,888,312 + -1.3 1,888,312 + -0.8 1,888,327 + -1.1 1,888,337 - +3.0
Or see this region's nucleotide sequence