Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1593 and Shewana3_1594 overlap by 1 nucleotides Shewana3_1594 and Shewana3_1595 are separated by 239 nucleotides
Shewana3_1593: Shewana3_1593 - hypothetical protein (RefSeq), at 1,869,518 to 1,870,642
_1593
Shewana3_1594: Shewana3_1594 - hypothetical protein (RefSeq), at 1,870,642 to 1,871,157
_1594
Shewana3_1595: Shewana3_1595 - PKD domain-containing protein (RefSeq), at 1,871,397 to 1,874,243
_1595
Position (kb)
1870
1871
1872 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1869.673 kb on + strand, within Shewana3_1593 at 1869.785 kb on - strand, within Shewana3_1593 at 1870.106 kb on - strand, within Shewana3_1593 at 1870.224 kb on - strand, within Shewana3_1593 at 1870.379 kb on - strand, within Shewana3_1593 at 1870.389 kb on - strand, within Shewana3_1593 at 1870.717 kb on + strand, within Shewana3_1594 at 1870.837 kb on + strand, within Shewana3_1594 at 1870.837 kb on + strand, within Shewana3_1594 at 1870.845 kb on - strand, within Shewana3_1594 at 1871.167 kb on - strand at 1871.172 kb on - strand at 1871.206 kb on - strand at 1871.487 kb on + strand at 1871.548 kb on + strand at 1871.550 kb on - strand at 1871.615 kb on + strand at 1871.789 kb on + strand, within Shewana3_1595 at 1871.828 kb on + strand, within Shewana3_1595 at 1871.828 kb on + strand, within Shewana3_1595 at 1871.836 kb on - strand, within Shewana3_1595 at 1871.836 kb on - strand, within Shewana3_1595 at 1871.838 kb on - strand, within Shewana3_1595 at 1871.991 kb on + strand, within Shewana3_1595
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,869,673 + Shewana3_1593 0.14 +0.3 1,869,785 - Shewana3_1593 0.24 +1.4 1,870,106 - Shewana3_1593 0.52 +2.0 1,870,224 - Shewana3_1593 0.63 +3.0 1,870,379 - Shewana3_1593 0.77 +1.4 1,870,389 - Shewana3_1593 0.77 +3.0 1,870,717 + Shewana3_1594 0.15 -1.5 1,870,837 + Shewana3_1594 0.38 -1.4 1,870,837 + Shewana3_1594 0.38 +2.0 1,870,845 - Shewana3_1594 0.39 +1.4 1,871,167 - +3.0 1,871,172 - +4.0 1,871,206 - +2.0 1,871,487 + -0.2 1,871,548 + +1.6 1,871,550 - +2.0 1,871,615 + +1.1 1,871,789 + Shewana3_1595 0.14 +0.7 1,871,828 + Shewana3_1595 0.15 +1.6 1,871,828 + Shewana3_1595 0.15 +1.7 1,871,836 - Shewana3_1595 0.15 +2.0 1,871,836 - Shewana3_1595 0.15 +3.0 1,871,838 - Shewana3_1595 0.15 -0.7 1,871,991 + Shewana3_1595 0.21 -0.2
Or see this region's nucleotide sequence