Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1592 and Shewana3_1593 overlap by 8 nucleotides Shewana3_1593 and Shewana3_1594 overlap by 1 nucleotides Shewana3_1594 and Shewana3_1595 are separated by 239 nucleotides
Shewana3_1592: Shewana3_1592 - hypothetical protein (RefSeq), at 1,868,461 to 1,869,525
_1592
Shewana3_1593: Shewana3_1593 - hypothetical protein (RefSeq), at 1,869,518 to 1,870,642
_1593
Shewana3_1594: Shewana3_1594 - hypothetical protein (RefSeq), at 1,870,642 to 1,871,157
_1594
Shewana3_1595: Shewana3_1595 - PKD domain-containing protein (RefSeq), at 1,871,397 to 1,874,243
_1595
Position (kb)
1869
1870
1871 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1868.626 kb on - strand, within Shewana3_1592 at 1868.699 kb on - strand, within Shewana3_1592 at 1868.833 kb on - strand, within Shewana3_1592 at 1869.010 kb on + strand, within Shewana3_1592 at 1869.218 kb on + strand, within Shewana3_1592 at 1869.427 kb on + strand at 1869.435 kb on - strand at 1869.435 kb on - strand at 1869.437 kb on - strand at 1869.439 kb on + strand at 1869.558 kb on + strand at 1869.620 kb on - strand at 1869.673 kb on + strand, within Shewana3_1593 at 1869.785 kb on - strand, within Shewana3_1593 at 1870.106 kb on - strand, within Shewana3_1593 at 1870.224 kb on - strand, within Shewana3_1593 at 1870.379 kb on - strand, within Shewana3_1593 at 1870.389 kb on - strand, within Shewana3_1593 at 1870.717 kb on + strand, within Shewana3_1594 at 1870.837 kb on + strand, within Shewana3_1594 at 1870.837 kb on + strand, within Shewana3_1594 at 1870.845 kb on - strand, within Shewana3_1594 at 1871.167 kb on - strand at 1871.172 kb on - strand at 1871.206 kb on - strand at 1871.487 kb on + strand at 1871.548 kb on + strand at 1871.550 kb on - strand at 1871.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,868,626 - Shewana3_1592 0.15 +1.6 1,868,699 - Shewana3_1592 0.22 +1.7 1,868,833 - Shewana3_1592 0.35 +0.8 1,869,010 + Shewana3_1592 0.52 +1.4 1,869,218 + Shewana3_1592 0.71 +1.4 1,869,427 + +0.4 1,869,435 - +4.0 1,869,435 - +0.3 1,869,437 - +0.6 1,869,439 + +1.3 1,869,558 + +2.4 1,869,620 - +1.4 1,869,673 + Shewana3_1593 0.14 +0.3 1,869,785 - Shewana3_1593 0.24 +1.4 1,870,106 - Shewana3_1593 0.52 +2.0 1,870,224 - Shewana3_1593 0.63 +3.0 1,870,379 - Shewana3_1593 0.77 +1.4 1,870,389 - Shewana3_1593 0.77 +3.0 1,870,717 + Shewana3_1594 0.15 -1.5 1,870,837 + Shewana3_1594 0.38 -1.4 1,870,837 + Shewana3_1594 0.38 +2.0 1,870,845 - Shewana3_1594 0.39 +1.4 1,871,167 - +3.0 1,871,172 - +4.0 1,871,206 - +2.0 1,871,487 + -0.2 1,871,548 + +1.6 1,871,550 - +2.0 1,871,615 + +1.1
Or see this region's nucleotide sequence