Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1589

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1588 and Shewana3_1589 are separated by 82 nucleotidesShewana3_1589 and Shewana3_1590 are separated by 34 nucleotidesShewana3_1590 and Shewana3_1591 are separated by 261 nucleotides Shewana3_1588: Shewana3_1588 - GCN5-related N-acetyltransferase (RefSeq), at 1,865,998 to 1,866,600 _1588 Shewana3_1589: Shewana3_1589 - GCN5-related N-acetyltransferase (RefSeq), at 1,866,683 to 1,867,147 _1589 Shewana3_1590: Shewana3_1590 - hypothetical protein (RefSeq), at 1,867,182 to 1,867,577 _1590 Shewana3_1591: Shewana3_1591 - hypothetical protein (RefSeq), at 1,867,839 to 1,868,225 _1591 Position (kb) 1866 1867 1868Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1865.784 kb on - strandat 1865.788 kb on + strandat 1865.793 kb on + strandat 1866.363 kb on - strand, within Shewana3_1588at 1866.592 kb on + strandat 1867.079 kb on + strand, within Shewana3_1589at 1867.079 kb on + strand, within Shewana3_1589at 1867.087 kb on - strand, within Shewana3_1589at 1867.337 kb on + strand, within Shewana3_1590at 1867.580 kb on - strandat 1867.580 kb on - strandat 1867.715 kb on + strandat 1867.723 kb on - strandat 1867.723 kb on - strandat 1867.744 kb on + strandat 1867.744 kb on + strandat 1867.788 kb on - strandat 1867.796 kb on - strandat 1868.067 kb on - strand, within Shewana3_1591

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,865,784 - -2.0
1,865,788 + +0.5
1,865,793 + +0.8
1,866,363 - Shewana3_1588 0.61 +3.0
1,866,592 + +0.2
1,867,079 + Shewana3_1589 0.85 -1.3
1,867,079 + Shewana3_1589 0.85 -1.1
1,867,087 - Shewana3_1589 0.87 +3.0
1,867,337 + Shewana3_1590 0.39 -0.9
1,867,580 - +1.3
1,867,580 - +4.0
1,867,715 + +2.0
1,867,723 - +3.0
1,867,723 - +1.0
1,867,744 + -0.3
1,867,744 + -2.4
1,867,788 - +3.0
1,867,796 - -0.8
1,868,067 - Shewana3_1591 0.59 -1.0

Or see this region's nucleotide sequence