Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1538

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1536 and Shewana3_1537 are separated by 144 nucleotidesShewana3_1537 and Shewana3_1538 are separated by 52 nucleotidesShewana3_1538 and Shewana3_1539 are separated by 3 nucleotides Shewana3_1536: Shewana3_1536 - hypothetical protein (RefSeq), at 1,791,925 to 1,792,992 _1536 Shewana3_1537: Shewana3_1537 - GDSL family lipase (RefSeq), at 1,793,137 to 1,793,736 _1537 Shewana3_1538: Shewana3_1538 - ABC transporter related (RefSeq), at 1,793,789 to 1,794,538 _1538 Shewana3_1539: Shewana3_1539 - hypothetical protein (RefSeq), at 1,794,542 to 1,797,043 _1539 Position (kb) 1793 1794 1795Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1793.289 kb on - strand, within Shewana3_1537at 1793.635 kb on + strand, within Shewana3_1537at 1793.698 kb on - strandat 1793.931 kb on + strand, within Shewana3_1538at 1793.964 kb on - strand, within Shewana3_1538at 1794.130 kb on - strand, within Shewana3_1538at 1794.190 kb on - strand, within Shewana3_1538at 1794.197 kb on + strand, within Shewana3_1538at 1794.205 kb on - strand, within Shewana3_1538at 1794.230 kb on + strand, within Shewana3_1538at 1794.338 kb on - strand, within Shewana3_1538at 1794.405 kb on + strand, within Shewana3_1538at 1794.478 kb on + strandat 1794.629 kb on - strandat 1794.653 kb on - strandat 1794.923 kb on + strand, within Shewana3_1539at 1794.935 kb on + strand, within Shewana3_1539at 1794.988 kb on + strand, within Shewana3_1539at 1795.320 kb on + strand, within Shewana3_1539at 1795.320 kb on + strand, within Shewana3_1539at 1795.320 kb on + strand, within Shewana3_1539at 1795.360 kb on + strand, within Shewana3_1539at 1795.405 kb on - strand, within Shewana3_1539

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,793,289 - Shewana3_1537 0.25 +3.4
1,793,635 + Shewana3_1537 0.83 -1.2
1,793,698 - +0.3
1,793,931 + Shewana3_1538 0.19 -1.7
1,793,964 - Shewana3_1538 0.23 +1.4
1,794,130 - Shewana3_1538 0.45 +1.4
1,794,190 - Shewana3_1538 0.53 -2.0
1,794,197 + Shewana3_1538 0.54 +0.8
1,794,205 - Shewana3_1538 0.55 +0.4
1,794,230 + Shewana3_1538 0.59 -1.1
1,794,338 - Shewana3_1538 0.73 +2.4
1,794,405 + Shewana3_1538 0.82 -1.2
1,794,478 + +1.4
1,794,629 - +0.3
1,794,653 - +0.7
1,794,923 + Shewana3_1539 0.15 -0.3
1,794,935 + Shewana3_1539 0.16 -0.7
1,794,988 + Shewana3_1539 0.18 -0.5
1,795,320 + Shewana3_1539 0.31 -0.6
1,795,320 + Shewana3_1539 0.31 +0.2
1,795,320 + Shewana3_1539 0.31 -1.3
1,795,360 + Shewana3_1539 0.33 -1.5
1,795,405 - Shewana3_1539 0.34 +1.2

Or see this region's nucleotide sequence