Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1530 and Shewana3_1531 are separated by 193 nucleotides Shewana3_1531 and Shewana3_1532 are separated by 140 nucleotides
Shewana3_1530: Shewana3_1530 - putative periplasmic protease (RefSeq), at 1,781,664 to 1,782,680
_1530
Shewana3_1531: Shewana3_1531 - AraC family transcriptional regulator (RefSeq), at 1,782,874 to 1,783,905
_1531
Shewana3_1532: Shewana3_1532 - hypothetical protein (RefSeq), at 1,784,046 to 1,785,230
_1532
Position (kb)
1782
1783
1784 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1782.481 kb on + strand, within Shewana3_1530 at 1782.575 kb on + strand, within Shewana3_1530 at 1782.866 kb on + strand at 1782.924 kb on - strand at 1782.986 kb on + strand, within Shewana3_1531 at 1783.258 kb on - strand, within Shewana3_1531 at 1783.343 kb on + strand, within Shewana3_1531 at 1783.343 kb on + strand, within Shewana3_1531 at 1783.351 kb on - strand, within Shewana3_1531 at 1783.351 kb on - strand, within Shewana3_1531 at 1783.374 kb on + strand, within Shewana3_1531 at 1783.527 kb on + strand, within Shewana3_1531 at 1783.541 kb on - strand, within Shewana3_1531 at 1783.557 kb on + strand, within Shewana3_1531 at 1783.570 kb on - strand, within Shewana3_1531 at 1783.739 kb on + strand, within Shewana3_1531 at 1783.739 kb on + strand, within Shewana3_1531 at 1783.943 kb on + strand at 1784.021 kb on - strand at 1784.156 kb on - strand at 1784.339 kb on - strand, within Shewana3_1532 at 1784.422 kb on + strand, within Shewana3_1532 at 1784.461 kb on - strand, within Shewana3_1532 at 1784.497 kb on - strand, within Shewana3_1532 at 1784.610 kb on + strand, within Shewana3_1532 at 1784.736 kb on - strand, within Shewana3_1532
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,782,481 + Shewana3_1530 0.80 -0.4 1,782,575 + Shewana3_1530 0.90 -0.8 1,782,866 + -0.2 1,782,924 - +1.0 1,782,986 + Shewana3_1531 0.11 +2.0 1,783,258 - Shewana3_1531 0.37 +4.0 1,783,343 + Shewana3_1531 0.45 +1.0 1,783,343 + Shewana3_1531 0.45 +4.0 1,783,351 - Shewana3_1531 0.46 +0.8 1,783,351 - Shewana3_1531 0.46 +4.0 1,783,374 + Shewana3_1531 0.48 +3.0 1,783,527 + Shewana3_1531 0.63 +0.5 1,783,541 - Shewana3_1531 0.65 +2.0 1,783,557 + Shewana3_1531 0.66 -0.3 1,783,570 - Shewana3_1531 0.67 +0.7 1,783,739 + Shewana3_1531 0.84 -2.4 1,783,739 + Shewana3_1531 0.84 +0.5 1,783,943 + -0.9 1,784,021 - -0.5 1,784,156 - +0.2 1,784,339 - Shewana3_1532 0.25 -1.4 1,784,422 + Shewana3_1532 0.32 -0.4 1,784,461 - Shewana3_1532 0.35 -0.9 1,784,497 - Shewana3_1532 0.38 +2.0 1,784,610 + Shewana3_1532 0.48 -0.8 1,784,736 - Shewana3_1532 0.58 -0.5
Or see this region's nucleotide sequence