Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1520 and Shewana3_1521 are separated by 369 nucleotides Shewana3_1521 and Shewana3_1522 overlap by 4 nucleotides Shewana3_1522 and Shewana3_1523 are separated by 189 nucleotides
Shewana3_1520: Shewana3_1520 - anthranilate synthase component I (RefSeq), at 1,770,319 to 1,772,010
_1520
Shewana3_1521: Shewana3_1521 - phosphotransferase domain-containing protein (RefSeq), at 1,772,380 to 1,773,240
_1521
Shewana3_1522: Shewana3_1522 - translation factor SUA5 (RefSeq), at 1,773,237 to 1,773,857
_1522
Shewana3_1523: Shewana3_1523 - condensin subunit ScpA (RefSeq), at 1,774,047 to 1,774,835
_1523
Position (kb)
1772
1773
1774 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1771.607 kb on + strand, within Shewana3_1520 at 1771.614 kb on + strand, within Shewana3_1520 at 1771.615 kb on - strand, within Shewana3_1520 at 1771.858 kb on - strand at 1771.860 kb on + strand at 1771.878 kb on + strand at 1771.955 kb on - strand at 1772.012 kb on - strand at 1772.131 kb on - strand at 1772.133 kb on - strand at 1772.404 kb on + strand at 1772.412 kb on - strand at 1772.564 kb on - strand, within Shewana3_1521 at 1772.636 kb on + strand, within Shewana3_1521 at 1772.649 kb on - strand, within Shewana3_1521 at 1772.785 kb on + strand, within Shewana3_1521 at 1772.853 kb on + strand, within Shewana3_1521 at 1772.853 kb on + strand, within Shewana3_1521 at 1772.956 kb on + strand, within Shewana3_1521 at 1772.974 kb on + strand, within Shewana3_1521 at 1772.975 kb on + strand, within Shewana3_1521 at 1772.975 kb on + strand, within Shewana3_1521 at 1772.975 kb on + strand, within Shewana3_1521 at 1773.289 kb on + strand at 1773.558 kb on - strand, within Shewana3_1522 at 1773.647 kb on - strand, within Shewana3_1522 at 1773.732 kb on + strand, within Shewana3_1522 at 1773.816 kb on + strand at 1773.967 kb on + strand at 1773.982 kb on + strand at 1773.982 kb on + strand at 1774.003 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,771,607 + Shewana3_1520 0.76 -0.0 1,771,614 + Shewana3_1520 0.77 -1.4 1,771,615 - Shewana3_1520 0.77 +0.8 1,771,858 - -1.0 1,771,860 + -1.2 1,771,878 + +1.8 1,771,955 - -0.3 1,772,012 - +0.3 1,772,131 - +0.3 1,772,133 - +1.2 1,772,404 + -0.5 1,772,412 - +0.4 1,772,564 - Shewana3_1521 0.21 +0.9 1,772,636 + Shewana3_1521 0.30 -1.8 1,772,649 - Shewana3_1521 0.31 -0.1 1,772,785 + Shewana3_1521 0.47 -2.1 1,772,853 + Shewana3_1521 0.55 -1.1 1,772,853 + Shewana3_1521 0.55 -0.1 1,772,956 + Shewana3_1521 0.67 -1.1 1,772,974 + Shewana3_1521 0.69 -1.3 1,772,975 + Shewana3_1521 0.69 -2.6 1,772,975 + Shewana3_1521 0.69 +0.5 1,772,975 + Shewana3_1521 0.69 +0.4 1,773,289 + +0.4 1,773,558 - Shewana3_1522 0.52 +1.0 1,773,647 - Shewana3_1522 0.66 +3.0 1,773,732 + Shewana3_1522 0.80 -0.5 1,773,816 + -0.1 1,773,967 + +0.1 1,773,982 + -2.7 1,773,982 + -0.8 1,774,003 + -0.9
Or see this region's nucleotide sequence