Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1496

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1494 and Shewana3_1495 overlap by 1 nucleotidesShewana3_1495 and Shewana3_1496 are separated by 3 nucleotidesShewana3_1496 and Shewana3_1497 are separated by 1 nucleotides Shewana3_1494: Shewana3_1494 - hypothetical protein (RefSeq), at 1,741,408 to 1,742,421 _1494 Shewana3_1495: Shewana3_1495 - hypothetical protein (RefSeq), at 1,742,421 to 1,743,125 _1495 Shewana3_1496: Shewana3_1496 - 2Fe-2S iron-sulfur cluster binding domain-containing protein (RefSeq), at 1,743,129 to 1,743,626 _1496 Shewana3_1497: Shewana3_1497 - aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (RefSeq), at 1,743,628 to 1,745,874 _1497 Position (kb) 1743 1744Strain fitness (log2 ratio) -1 0 1 2 3at 1742.178 kb on + strand, within Shewana3_1494at 1742.238 kb on - strand, within Shewana3_1494at 1742.374 kb on + strandat 1742.382 kb on - strandat 1742.713 kb on - strand, within Shewana3_1495at 1742.798 kb on - strand, within Shewana3_1495at 1742.830 kb on + strand, within Shewana3_1495at 1743.120 kb on - strandat 1743.290 kb on - strand, within Shewana3_1496at 1743.351 kb on + strand, within Shewana3_1496at 1743.729 kb on - strandat 1743.762 kb on + strandat 1743.938 kb on - strand, within Shewana3_1497at 1744.158 kb on + strand, within Shewana3_1497at 1744.158 kb on + strand, within Shewana3_1497at 1744.261 kb on + strand, within Shewana3_1497at 1744.404 kb on + strand, within Shewana3_1497at 1744.412 kb on - strand, within Shewana3_1497at 1744.439 kb on + strand, within Shewana3_1497

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,742,178 + Shewana3_1494 0.76 -1.1
1,742,238 - Shewana3_1494 0.82 +2.9
1,742,374 + -0.2
1,742,382 - +2.5
1,742,713 - Shewana3_1495 0.41 -0.2
1,742,798 - Shewana3_1495 0.53 +0.5
1,742,830 + Shewana3_1495 0.58 +0.3
1,743,120 - -1.4
1,743,290 - Shewana3_1496 0.32 -1.3
1,743,351 + Shewana3_1496 0.45 -1.3
1,743,729 - -1.3
1,743,762 + -1.5
1,743,938 - Shewana3_1497 0.14 -1.4
1,744,158 + Shewana3_1497 0.24 +3.7
1,744,158 + Shewana3_1497 0.24 -1.1
1,744,261 + Shewana3_1497 0.28 -0.9
1,744,404 + Shewana3_1497 0.35 +0.4
1,744,412 - Shewana3_1497 0.35 +2.9
1,744,439 + Shewana3_1497 0.36 -0.2

Or see this region's nucleotide sequence