Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1494 and Shewana3_1495 overlap by 1 nucleotides Shewana3_1495 and Shewana3_1496 are separated by 3 nucleotides Shewana3_1496 and Shewana3_1497 are separated by 1 nucleotides
Shewana3_1494: Shewana3_1494 - hypothetical protein (RefSeq), at 1,741,408 to 1,742,421
_1494
Shewana3_1495: Shewana3_1495 - hypothetical protein (RefSeq), at 1,742,421 to 1,743,125
_1495
Shewana3_1496: Shewana3_1496 - 2Fe-2S iron-sulfur cluster binding domain-containing protein (RefSeq), at 1,743,129 to 1,743,626
_1496
Shewana3_1497: Shewana3_1497 - aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (RefSeq), at 1,743,628 to 1,745,874
_1497
Position (kb)
1743
1744 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1742.178 kb on + strand, within Shewana3_1494 at 1742.238 kb on - strand, within Shewana3_1494 at 1742.374 kb on + strand at 1742.382 kb on - strand at 1742.713 kb on - strand, within Shewana3_1495 at 1742.798 kb on - strand, within Shewana3_1495 at 1742.830 kb on + strand, within Shewana3_1495 at 1743.120 kb on - strand at 1743.290 kb on - strand, within Shewana3_1496 at 1743.351 kb on + strand, within Shewana3_1496 at 1743.729 kb on - strand at 1743.762 kb on + strand at 1743.938 kb on - strand, within Shewana3_1497 at 1744.158 kb on + strand, within Shewana3_1497 at 1744.158 kb on + strand, within Shewana3_1497 at 1744.261 kb on + strand, within Shewana3_1497 at 1744.404 kb on + strand, within Shewana3_1497 at 1744.412 kb on - strand, within Shewana3_1497 at 1744.439 kb on + strand, within Shewana3_1497
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,742,178 + Shewana3_1494 0.76 -1.1 1,742,238 - Shewana3_1494 0.82 +2.9 1,742,374 + -0.2 1,742,382 - +2.5 1,742,713 - Shewana3_1495 0.41 -0.2 1,742,798 - Shewana3_1495 0.53 +0.5 1,742,830 + Shewana3_1495 0.58 +0.3 1,743,120 - -1.4 1,743,290 - Shewana3_1496 0.32 -1.3 1,743,351 + Shewana3_1496 0.45 -1.3 1,743,729 - -1.3 1,743,762 + -1.5 1,743,938 - Shewana3_1497 0.14 -1.4 1,744,158 + Shewana3_1497 0.24 +3.7 1,744,158 + Shewana3_1497 0.24 -1.1 1,744,261 + Shewana3_1497 0.28 -0.9 1,744,404 + Shewana3_1497 0.35 +0.4 1,744,412 - Shewana3_1497 0.35 +2.9 1,744,439 + Shewana3_1497 0.36 -0.2
Or see this region's nucleotide sequence