Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1494

Experiment: Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1493 and Shewana3_1494 are separated by 225 nucleotidesShewana3_1494 and Shewana3_1495 overlap by 1 nucleotidesShewana3_1495 and Shewana3_1496 are separated by 3 nucleotides Shewana3_1493: Shewana3_1493 - beta-lactamase domain-containing protein (RefSeq), at 1,740,538 to 1,741,182 _1493 Shewana3_1494: Shewana3_1494 - hypothetical protein (RefSeq), at 1,741,408 to 1,742,421 _1494 Shewana3_1495: Shewana3_1495 - hypothetical protein (RefSeq), at 1,742,421 to 1,743,125 _1495 Shewana3_1496: Shewana3_1496 - 2Fe-2S iron-sulfur cluster binding domain-containing protein (RefSeq), at 1,743,129 to 1,743,626 _1496 Position (kb) 1741 1742 1743Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1740.918 kb on + strand, within Shewana3_1493at 1740.923 kb on + strand, within Shewana3_1493at 1740.923 kb on + strand, within Shewana3_1493at 1741.064 kb on + strand, within Shewana3_1493at 1741.399 kb on + strandat 1741.401 kb on + strandat 1741.488 kb on + strandat 1741.588 kb on + strand, within Shewana3_1494at 1741.679 kb on - strand, within Shewana3_1494at 1741.736 kb on + strand, within Shewana3_1494at 1741.842 kb on + strand, within Shewana3_1494at 1742.096 kb on + strand, within Shewana3_1494at 1742.096 kb on + strand, within Shewana3_1494at 1742.178 kb on + strand, within Shewana3_1494at 1742.238 kb on - strand, within Shewana3_1494at 1742.374 kb on + strandat 1742.382 kb on - strandat 1742.713 kb on - strand, within Shewana3_1495at 1742.798 kb on - strand, within Shewana3_1495at 1742.830 kb on + strand, within Shewana3_1495at 1743.120 kb on - strandat 1743.290 kb on - strand, within Shewana3_1496at 1743.351 kb on + strand, within Shewana3_1496

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
remove
1,740,918 + Shewana3_1493 0.59 -1.8
1,740,923 + Shewana3_1493 0.60 +0.3
1,740,923 + Shewana3_1493 0.60 -0.7
1,741,064 + Shewana3_1493 0.82 -0.2
1,741,399 + -0.6
1,741,401 + +0.4
1,741,488 + -1.1
1,741,588 + Shewana3_1494 0.18 -1.0
1,741,679 - Shewana3_1494 0.27 -0.9
1,741,736 + Shewana3_1494 0.32 -0.5
1,741,842 + Shewana3_1494 0.43 -1.3
1,742,096 + Shewana3_1494 0.68 -0.1
1,742,096 + Shewana3_1494 0.68 +0.1
1,742,178 + Shewana3_1494 0.76 -1.1
1,742,238 - Shewana3_1494 0.82 +2.9
1,742,374 + -0.2
1,742,382 - +2.5
1,742,713 - Shewana3_1495 0.41 -0.2
1,742,798 - Shewana3_1495 0.53 +0.5
1,742,830 + Shewana3_1495 0.58 +0.3
1,743,120 - -1.4
1,743,290 - Shewana3_1496 0.32 -1.3
1,743,351 + Shewana3_1496 0.45 -1.3

Or see this region's nucleotide sequence