Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1493 and Shewana3_1494 are separated by 225 nucleotides Shewana3_1494 and Shewana3_1495 overlap by 1 nucleotides Shewana3_1495 and Shewana3_1496 are separated by 3 nucleotides
Shewana3_1493: Shewana3_1493 - beta-lactamase domain-containing protein (RefSeq), at 1,740,538 to 1,741,182
_1493
Shewana3_1494: Shewana3_1494 - hypothetical protein (RefSeq), at 1,741,408 to 1,742,421
_1494
Shewana3_1495: Shewana3_1495 - hypothetical protein (RefSeq), at 1,742,421 to 1,743,125
_1495
Shewana3_1496: Shewana3_1496 - 2Fe-2S iron-sulfur cluster binding domain-containing protein (RefSeq), at 1,743,129 to 1,743,626
_1496
Position (kb)
1741
1742
1743 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1740.918 kb on + strand, within Shewana3_1493 at 1740.923 kb on + strand, within Shewana3_1493 at 1740.923 kb on + strand, within Shewana3_1493 at 1741.064 kb on + strand, within Shewana3_1493 at 1741.399 kb on + strand at 1741.401 kb on + strand at 1741.488 kb on + strand at 1741.588 kb on + strand, within Shewana3_1494 at 1741.679 kb on - strand, within Shewana3_1494 at 1741.736 kb on + strand, within Shewana3_1494 at 1741.842 kb on + strand, within Shewana3_1494 at 1742.096 kb on + strand, within Shewana3_1494 at 1742.096 kb on + strand, within Shewana3_1494 at 1742.178 kb on + strand, within Shewana3_1494 at 1742.238 kb on - strand, within Shewana3_1494 at 1742.374 kb on + strand at 1742.382 kb on - strand at 1742.713 kb on - strand, within Shewana3_1495 at 1742.798 kb on - strand, within Shewana3_1495 at 1742.830 kb on + strand, within Shewana3_1495 at 1743.120 kb on - strand at 1743.290 kb on - strand, within Shewana3_1496 at 1743.351 kb on + strand, within Shewana3_1496
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,740,918 + Shewana3_1493 0.59 -1.8 1,740,923 + Shewana3_1493 0.60 +0.3 1,740,923 + Shewana3_1493 0.60 -0.7 1,741,064 + Shewana3_1493 0.82 -0.2 1,741,399 + -0.6 1,741,401 + +0.4 1,741,488 + -1.1 1,741,588 + Shewana3_1494 0.18 -1.0 1,741,679 - Shewana3_1494 0.27 -0.9 1,741,736 + Shewana3_1494 0.32 -0.5 1,741,842 + Shewana3_1494 0.43 -1.3 1,742,096 + Shewana3_1494 0.68 -0.1 1,742,096 + Shewana3_1494 0.68 +0.1 1,742,178 + Shewana3_1494 0.76 -1.1 1,742,238 - Shewana3_1494 0.82 +2.9 1,742,374 + -0.2 1,742,382 - +2.5 1,742,713 - Shewana3_1495 0.41 -0.2 1,742,798 - Shewana3_1495 0.53 +0.5 1,742,830 + Shewana3_1495 0.58 +0.3 1,743,120 - -1.4 1,743,290 - Shewana3_1496 0.32 -1.3 1,743,351 + Shewana3_1496 0.45 -1.3
Or see this region's nucleotide sequence