Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1490 and Shewana3_1491 are separated by 41 nucleotides Shewana3_1491 and Shewana3_1492 are separated by 221 nucleotides Shewana3_1492 and Shewana3_1493 are separated by 179 nucleotides
Shewana3_1490: Shewana3_1490 - phenylalanine/histidine ammonia-lyase (RefSeq), at 1,736,785 to 1,738,422
_1490
Shewana3_1491: Shewana3_1491 - tetraheme cytochrome c (RefSeq), at 1,738,464 to 1,738,847
_1491
Shewana3_1492: Shewana3_1492 - prolyl aminopeptidase 2 (RefSeq), at 1,739,069 to 1,740,358
_1492
Shewana3_1493: Shewana3_1493 - beta-lactamase domain-containing protein (RefSeq), at 1,740,538 to 1,741,182
_1493
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1738.326 kb on + strand at 1738.326 kb on + strand at 1739.102 kb on - strand at 1739.152 kb on + strand at 1739.212 kb on - strand, within Shewana3_1492 at 1739.296 kb on - strand, within Shewana3_1492 at 1739.463 kb on - strand, within Shewana3_1492 at 1739.465 kb on + strand, within Shewana3_1492 at 1739.808 kb on + strand, within Shewana3_1492 at 1740.040 kb on + strand, within Shewana3_1492 at 1740.088 kb on + strand, within Shewana3_1492 at 1740.088 kb on + strand, within Shewana3_1492 at 1740.125 kb on + strand, within Shewana3_1492 at 1740.240 kb on + strand at 1740.248 kb on - strand at 1740.374 kb on - strand at 1740.918 kb on + strand, within Shewana3_1493 at 1740.923 kb on + strand, within Shewana3_1493 at 1740.923 kb on + strand, within Shewana3_1493 at 1741.064 kb on + strand, within Shewana3_1493
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,738,326 + -0.6 1,738,326 + -0.6 1,739,102 - -1.3 1,739,152 + -1.3 1,739,212 - Shewana3_1492 0.11 -0.5 1,739,296 - Shewana3_1492 0.18 +0.0 1,739,463 - Shewana3_1492 0.31 -2.4 1,739,465 + Shewana3_1492 0.31 -1.8 1,739,808 + Shewana3_1492 0.57 -1.8 1,740,040 + Shewana3_1492 0.75 +0.7 1,740,088 + Shewana3_1492 0.79 +0.5 1,740,088 + Shewana3_1492 0.79 -1.3 1,740,125 + Shewana3_1492 0.82 +2.3 1,740,240 + -1.5 1,740,248 - +1.6 1,740,374 - -0.4 1,740,918 + Shewana3_1493 0.59 -1.8 1,740,923 + Shewana3_1493 0.60 +0.3 1,740,923 + Shewana3_1493 0.60 -0.7 1,741,064 + Shewana3_1493 0.82 -0.2
Or see this region's nucleotide sequence