Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1492

Experiment: Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1490 and Shewana3_1491 are separated by 41 nucleotidesShewana3_1491 and Shewana3_1492 are separated by 221 nucleotidesShewana3_1492 and Shewana3_1493 are separated by 179 nucleotides Shewana3_1490: Shewana3_1490 - phenylalanine/histidine ammonia-lyase (RefSeq), at 1,736,785 to 1,738,422 _1490 Shewana3_1491: Shewana3_1491 - tetraheme cytochrome c (RefSeq), at 1,738,464 to 1,738,847 _1491 Shewana3_1492: Shewana3_1492 - prolyl aminopeptidase 2 (RefSeq), at 1,739,069 to 1,740,358 _1492 Shewana3_1493: Shewana3_1493 - beta-lactamase domain-containing protein (RefSeq), at 1,740,538 to 1,741,182 _1493 Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -2 -1 0 1 2at 1738.326 kb on + strandat 1738.326 kb on + strandat 1739.102 kb on - strandat 1739.152 kb on + strandat 1739.212 kb on - strand, within Shewana3_1492at 1739.296 kb on - strand, within Shewana3_1492at 1739.463 kb on - strand, within Shewana3_1492at 1739.465 kb on + strand, within Shewana3_1492at 1739.808 kb on + strand, within Shewana3_1492at 1740.040 kb on + strand, within Shewana3_1492at 1740.088 kb on + strand, within Shewana3_1492at 1740.088 kb on + strand, within Shewana3_1492at 1740.125 kb on + strand, within Shewana3_1492at 1740.240 kb on + strandat 1740.248 kb on - strandat 1740.374 kb on - strandat 1740.918 kb on + strand, within Shewana3_1493at 1740.923 kb on + strand, within Shewana3_1493at 1740.923 kb on + strand, within Shewana3_1493at 1741.064 kb on + strand, within Shewana3_1493

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
remove
1,738,326 + -0.6
1,738,326 + -0.6
1,739,102 - -1.3
1,739,152 + -1.3
1,739,212 - Shewana3_1492 0.11 -0.5
1,739,296 - Shewana3_1492 0.18 +0.0
1,739,463 - Shewana3_1492 0.31 -2.4
1,739,465 + Shewana3_1492 0.31 -1.8
1,739,808 + Shewana3_1492 0.57 -1.8
1,740,040 + Shewana3_1492 0.75 +0.7
1,740,088 + Shewana3_1492 0.79 +0.5
1,740,088 + Shewana3_1492 0.79 -1.3
1,740,125 + Shewana3_1492 0.82 +2.3
1,740,240 + -1.5
1,740,248 - +1.6
1,740,374 - -0.4
1,740,918 + Shewana3_1493 0.59 -1.8
1,740,923 + Shewana3_1493 0.60 +0.3
1,740,923 + Shewana3_1493 0.60 -0.7
1,741,064 + Shewana3_1493 0.82 -0.2

Or see this region's nucleotide sequence