Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1456 and Shewana3_1457 overlap by 7 nucleotides Shewana3_1457 and Shewana3_1458 are separated by 63 nucleotides Shewana3_1458 and Shewana3_1459 are separated by 72 nucleotides
Shewana3_1456: Shewana3_1456 - von Willebrand factor, type A (RefSeq), at 1,689,279 to 1,690,295
_1456
Shewana3_1457: Shewana3_1457 - hypothetical protein (RefSeq), at 1,690,289 to 1,690,882
_1457
Shewana3_1458: Shewana3_1458 - hypothetical protein (RefSeq), at 1,690,946 to 1,691,914
_1458
Shewana3_1459: Shewana3_1459 - ATPase (RefSeq), at 1,691,987 to 1,692,943
_1459
Position (kb)
1690
1691
1692 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1689.954 kb on + strand, within Shewana3_1456 at 1689.957 kb on - strand, within Shewana3_1456 at 1690.189 kb on - strand, within Shewana3_1456 at 1690.218 kb on - strand at 1690.377 kb on - strand, within Shewana3_1457 at 1690.441 kb on + strand, within Shewana3_1457 at 1690.741 kb on - strand, within Shewana3_1457 at 1690.753 kb on - strand, within Shewana3_1457 at 1690.764 kb on + strand, within Shewana3_1457 at 1690.772 kb on - strand, within Shewana3_1457 at 1690.782 kb on + strand, within Shewana3_1457 at 1690.893 kb on + strand at 1690.923 kb on - strand at 1690.976 kb on + strand at 1690.976 kb on + strand at 1690.984 kb on - strand at 1691.059 kb on + strand, within Shewana3_1458 at 1691.180 kb on - strand, within Shewana3_1458 at 1691.505 kb on - strand, within Shewana3_1458 at 1691.505 kb on - strand, within Shewana3_1458 at 1691.569 kb on + strand, within Shewana3_1458 at 1691.638 kb on - strand, within Shewana3_1458 at 1691.792 kb on - strand, within Shewana3_1458 at 1691.882 kb on + strand at 1691.882 kb on + strand at 1691.882 kb on + strand at 1691.882 kb on + strand at 1691.882 kb on + strand at 1691.890 kb on - strand at 1691.890 kb on - strand at 1691.976 kb on - strand at 1692.087 kb on - strand, within Shewana3_1459 at 1692.136 kb on + strand, within Shewana3_1459 at 1692.146 kb on + strand, within Shewana3_1459 at 1692.155 kb on - strand, within Shewana3_1459 at 1692.205 kb on - strand, within Shewana3_1459 at 1692.220 kb on + strand, within Shewana3_1459 at 1692.228 kb on + strand, within Shewana3_1459 at 1692.398 kb on - strand, within Shewana3_1459 at 1692.584 kb on + strand, within Shewana3_1459 at 1692.648 kb on - strand, within Shewana3_1459 at 1692.843 kb on + strand, within Shewana3_1459
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,689,954 + Shewana3_1456 0.66 -1.0 1,689,957 - Shewana3_1456 0.67 -1.3 1,690,189 - Shewana3_1456 0.89 +0.4 1,690,218 - -1.1 1,690,377 - Shewana3_1457 0.15 +0.3 1,690,441 + Shewana3_1457 0.26 +0.5 1,690,741 - Shewana3_1457 0.76 +2.3 1,690,753 - Shewana3_1457 0.78 -1.8 1,690,764 + Shewana3_1457 0.80 +2.9 1,690,772 - Shewana3_1457 0.81 +1.9 1,690,782 + Shewana3_1457 0.83 -0.9 1,690,893 + +1.2 1,690,923 - +2.9 1,690,976 + -2.1 1,690,976 + +0.5 1,690,984 - -2.1 1,691,059 + Shewana3_1458 0.12 -1.0 1,691,180 - Shewana3_1458 0.24 +1.0 1,691,505 - Shewana3_1458 0.58 +0.0 1,691,505 - Shewana3_1458 0.58 +1.9 1,691,569 + Shewana3_1458 0.64 -2.1 1,691,638 - Shewana3_1458 0.71 -1.0 1,691,792 - Shewana3_1458 0.87 +0.3 1,691,882 + +1.4 1,691,882 + -0.4 1,691,882 + +2.3 1,691,882 + +1.2 1,691,882 + +1.5 1,691,890 - -1.1 1,691,890 - -0.4 1,691,976 - +0.9 1,692,087 - Shewana3_1459 0.10 +0.1 1,692,136 + Shewana3_1459 0.16 -1.7 1,692,146 + Shewana3_1459 0.17 -1.1 1,692,155 - Shewana3_1459 0.18 +0.6 1,692,205 - Shewana3_1459 0.23 -0.3 1,692,220 + Shewana3_1459 0.24 +0.9 1,692,228 + Shewana3_1459 0.25 -0.5 1,692,398 - Shewana3_1459 0.43 -0.2 1,692,584 + Shewana3_1459 0.62 -0.4 1,692,648 - Shewana3_1459 0.69 +1.5 1,692,843 + Shewana3_1459 0.89 -1.9
Or see this region's nucleotide sequence