Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1428 and Shewana3_1429 are separated by 336 nucleotides Shewana3_1429 and Shewana3_1430 are separated by 111 nucleotides Shewana3_1430 and Shewana3_1431 are separated by 113 nucleotides
Shewana3_1428: Shewana3_1428 - oxidoreductase domain-containing protein (RefSeq), at 1,658,274 to 1,659,653
_1428
Shewana3_1429: Shewana3_1429 - hypothetical protein (RefSeq), at 1,659,990 to 1,660,424
_1429
Shewana3_1430: Shewana3_1430 - pseudouridine synthase (RefSeq), at 1,660,536 to 1,661,207
_1430
Shewana3_1431: Shewana3_1431 - redoxin domain-containing protein (RefSeq), at 1,661,321 to 1,661,875
_1431
Position (kb)
1659
1660
1661 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1659.013 kb on - strand, within Shewana3_1428 at 1659.013 kb on - strand, within Shewana3_1428 at 1659.028 kb on + strand, within Shewana3_1428 at 1659.152 kb on - strand, within Shewana3_1428 at 1659.203 kb on + strand, within Shewana3_1428 at 1659.206 kb on - strand, within Shewana3_1428 at 1659.464 kb on + strand, within Shewana3_1428 at 1659.550 kb on - strand at 1659.586 kb on + strand at 1659.994 kb on + strand at 1660.256 kb on + strand, within Shewana3_1429 at 1660.481 kb on - strand at 1660.548 kb on - strand at 1660.556 kb on - strand at 1660.670 kb on - strand, within Shewana3_1430 at 1660.782 kb on + strand, within Shewana3_1430 at 1660.917 kb on + strand, within Shewana3_1430 at 1660.950 kb on - strand, within Shewana3_1430 at 1660.955 kb on - strand, within Shewana3_1430 at 1661.327 kb on - strand at 1661.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,659,013 - Shewana3_1428 0.54 -0.1 1,659,013 - Shewana3_1428 0.54 +0.2 1,659,028 + Shewana3_1428 0.55 +0.8 1,659,152 - Shewana3_1428 0.64 +1.4 1,659,203 + Shewana3_1428 0.67 +0.6 1,659,206 - Shewana3_1428 0.68 +3.8 1,659,464 + Shewana3_1428 0.86 +0.1 1,659,550 - +1.5 1,659,586 + -1.4 1,659,994 + +0.4 1,660,256 + Shewana3_1429 0.61 -1.4 1,660,481 - +2.8 1,660,548 - +0.4 1,660,556 - -1.3 1,660,670 - Shewana3_1430 0.20 +0.2 1,660,782 + Shewana3_1430 0.37 +0.3 1,660,917 + Shewana3_1430 0.57 +1.0 1,660,950 - Shewana3_1430 0.62 +0.0 1,660,955 - Shewana3_1430 0.62 -1.8 1,661,327 - -0.3 1,661,327 - -0.7
Or see this region's nucleotide sequence