Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1416

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1414 and Shewana3_1415 overlap by 1 nucleotidesShewana3_1415 and Shewana3_1416 are separated by 62 nucleotidesShewana3_1416 and Shewana3_1417 are separated by 394 nucleotidesShewana3_1417 and Shewana3_R0054 are separated by 143 nucleotidesShewana3_R0054 and Shewana3_R0055 are separated by 25 nucleotidesShewana3_R0055 and Shewana3_R0056 are separated by 25 nucleotides Shewana3_1414: Shewana3_1414 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,638,728 to 1,640,125 _1414 Shewana3_1415: Shewana3_1415 - tripartite ATP-independent periplasmic transporter DctQ (RefSeq), at 1,640,125 to 1,640,769 _1415 Shewana3_1416: Shewana3_1416 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 1,640,832 to 1,641,854 _1416 Shewana3_1417: Shewana3_1417 - hypothetical protein (RefSeq), at 1,642,249 to 1,642,479 _1417 Shewana3_R0054: Shewana3_R0054 - tRNA-Val (RefSeq), at 1,642,623 to 1,642,698 _R0054 Shewana3_R0055: Shewana3_R0055 - tRNA-Val (RefSeq), at 1,642,724 to 1,642,799 _R0055 Shewana3_R0056: Shewana3_R0056 - tRNA-Val (RefSeq), at 1,642,825 to 1,642,900 _R0056 Position (kb) 1640 1641 1642Strain fitness (log2 ratio) -1 0 1 2 3 4at 1639.967 kb on - strand, within Shewana3_1414at 1640.246 kb on + strand, within Shewana3_1415at 1640.302 kb on + strand, within Shewana3_1415at 1640.391 kb on - strand, within Shewana3_1415at 1640.456 kb on - strand, within Shewana3_1415at 1640.574 kb on - strand, within Shewana3_1415at 1640.578 kb on + strand, within Shewana3_1415at 1640.588 kb on + strand, within Shewana3_1415at 1640.588 kb on + strand, within Shewana3_1415at 1640.625 kb on + strand, within Shewana3_1415at 1640.625 kb on + strand, within Shewana3_1415at 1640.633 kb on - strand, within Shewana3_1415at 1641.062 kb on + strand, within Shewana3_1416at 1641.105 kb on + strand, within Shewana3_1416at 1641.120 kb on + strand, within Shewana3_1416at 1641.123 kb on - strand, within Shewana3_1416at 1641.184 kb on + strand, within Shewana3_1416at 1641.192 kb on - strand, within Shewana3_1416at 1641.280 kb on + strand, within Shewana3_1416at 1641.364 kb on - strandat 1641.500 kb on - strand, within Shewana3_1416at 1641.655 kb on + strand, within Shewana3_1416at 1641.769 kb on - strandat 1641.964 kb on + strandat 1641.972 kb on - strandat 1642.233 kb on - strandat 1642.414 kb on + strand, within Shewana3_1417at 1642.507 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,639,967 - Shewana3_1414 0.89 +1.8
1,640,246 + Shewana3_1415 0.19 +1.0
1,640,302 + Shewana3_1415 0.27 +2.8
1,640,391 - Shewana3_1415 0.41 +1.5
1,640,456 - Shewana3_1415 0.51 +2.8
1,640,574 - Shewana3_1415 0.70 -1.0
1,640,578 + Shewana3_1415 0.70 +0.3
1,640,588 + Shewana3_1415 0.72 +2.0
1,640,588 + Shewana3_1415 0.72 -1.7
1,640,625 + Shewana3_1415 0.78 -0.2
1,640,625 + Shewana3_1415 0.78 -1.0
1,640,633 - Shewana3_1415 0.79 +3.8
1,641,062 + Shewana3_1416 0.22 -0.3
1,641,105 + Shewana3_1416 0.27 +0.8
1,641,120 + Shewana3_1416 0.28 +0.2
1,641,123 - Shewana3_1416 0.28 -0.4
1,641,184 + Shewana3_1416 0.34 -1.0
1,641,192 - Shewana3_1416 0.35 -0.4
1,641,280 + Shewana3_1416 0.44 +0.9
1,641,364 - +2.2
1,641,500 - Shewana3_1416 0.65 -0.9
1,641,655 + Shewana3_1416 0.80 -1.3
1,641,769 - +1.8
1,641,964 + -0.4
1,641,972 - -0.2
1,642,233 - +2.8
1,642,414 + Shewana3_1417 0.71 +0.9
1,642,507 - +0.8

Or see this region's nucleotide sequence