Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1413

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1412 and Shewana3_1413 overlap by 4 nucleotidesShewana3_1413 and Shewana3_1414 are separated by 98 nucleotides Shewana3_1412: Shewana3_1412 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 1,635,442 to 1,636,821 _1412 Shewana3_1413: Shewana3_1413 - ATPase domain-containing protein (RefSeq), at 1,636,818 to 1,638,629 _1413 Shewana3_1414: Shewana3_1414 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,638,728 to 1,640,125 _1414 Position (kb) 1636 1637 1638 1639Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1636.232 kb on - strand, within Shewana3_1412at 1636.331 kb on - strand, within Shewana3_1412at 1636.386 kb on + strand, within Shewana3_1412at 1636.483 kb on + strand, within Shewana3_1412at 1636.819 kb on + strandat 1636.906 kb on - strandat 1636.966 kb on - strandat 1637.072 kb on + strand, within Shewana3_1413at 1637.244 kb on + strand, within Shewana3_1413at 1637.468 kb on + strand, within Shewana3_1413at 1637.529 kb on - strand, within Shewana3_1413at 1637.585 kb on - strand, within Shewana3_1413at 1637.713 kb on + strand, within Shewana3_1413at 1637.774 kb on + strand, within Shewana3_1413at 1637.841 kb on - strand, within Shewana3_1413at 1638.127 kb on + strand, within Shewana3_1413at 1638.178 kb on - strand, within Shewana3_1413at 1638.178 kb on - strand, within Shewana3_1413at 1638.180 kb on - strand, within Shewana3_1413at 1638.208 kb on + strand, within Shewana3_1413at 1638.208 kb on + strand, within Shewana3_1413at 1638.208 kb on + strand, within Shewana3_1413at 1638.285 kb on + strand, within Shewana3_1413at 1638.350 kb on + strand, within Shewana3_1413at 1638.350 kb on + strand, within Shewana3_1413at 1638.807 kb on + strandat 1638.817 kb on + strandat 1638.822 kb on + strandat 1638.832 kb on + strandat 1638.897 kb on - strand, within Shewana3_1414at 1638.929 kb on - strand, within Shewana3_1414at 1639.077 kb on - strand, within Shewana3_1414at 1639.093 kb on + strand, within Shewana3_1414at 1639.220 kb on - strand, within Shewana3_1414at 1639.282 kb on - strand, within Shewana3_1414at 1639.449 kb on + strand, within Shewana3_1414at 1639.475 kb on + strand, within Shewana3_1414at 1639.477 kb on - strand, within Shewana3_1414

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,636,232 - Shewana3_1412 0.57 +2.2
1,636,331 - Shewana3_1412 0.64 -0.7
1,636,386 + Shewana3_1412 0.68 -0.3
1,636,483 + Shewana3_1412 0.75 +0.0
1,636,819 + +2.2
1,636,906 - -0.7
1,636,966 - +1.6
1,637,072 + Shewana3_1413 0.14 -0.6
1,637,244 + Shewana3_1413 0.24 -1.5
1,637,468 + Shewana3_1413 0.36 -0.9
1,637,529 - Shewana3_1413 0.39 +1.8
1,637,585 - Shewana3_1413 0.42 +1.2
1,637,713 + Shewana3_1413 0.49 -0.6
1,637,774 + Shewana3_1413 0.53 -1.2
1,637,841 - Shewana3_1413 0.56 +0.3
1,638,127 + Shewana3_1413 0.72 -0.7
1,638,178 - Shewana3_1413 0.75 +0.8
1,638,178 - Shewana3_1413 0.75 -1.1
1,638,180 - Shewana3_1413 0.75 +1.0
1,638,208 + Shewana3_1413 0.77 +1.5
1,638,208 + Shewana3_1413 0.77 -0.2
1,638,208 + Shewana3_1413 0.77 -1.6
1,638,285 + Shewana3_1413 0.81 -0.9
1,638,350 + Shewana3_1413 0.85 -0.2
1,638,350 + Shewana3_1413 0.85 +1.2
1,638,807 + +0.5
1,638,817 + +2.8
1,638,822 + +0.8
1,638,832 + -1.4
1,638,897 - Shewana3_1414 0.12 +0.1
1,638,929 - Shewana3_1414 0.14 -2.0
1,639,077 - Shewana3_1414 0.25 +1.5
1,639,093 + Shewana3_1414 0.26 -1.4
1,639,220 - Shewana3_1414 0.35 -1.7
1,639,282 - Shewana3_1414 0.40 +0.8
1,639,449 + Shewana3_1414 0.52 +0.6
1,639,475 + Shewana3_1414 0.53 -0.1
1,639,477 - Shewana3_1414 0.54 +0.2

Or see this region's nucleotide sequence