Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1412
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,634,534 | - | Shewana3_1411 | 0.75 | +1.8 | |
1,634,770 | + | Shewana3_1411 | 0.82 | +1.7 | |
1,634,770 | - | Shewana3_1411 | 0.82 | -0.9 | |
1,635,065 | + | -0.3 | |||
1,635,119 | + | +0.4 | |||
1,635,540 | + | -0.1 | |||
1,635,548 | - | -0.4 | |||
1,635,772 | - | Shewana3_1412 | 0.24 | -2.0 | |
1,636,232 | - | Shewana3_1412 | 0.57 | +2.2 | |
1,636,331 | - | Shewana3_1412 | 0.64 | -0.7 | |
1,636,386 | + | Shewana3_1412 | 0.68 | -0.3 | |
1,636,483 | + | Shewana3_1412 | 0.75 | +0.0 | |
1,636,819 | + | +2.2 | |||
1,636,906 | - | -0.7 | |||
1,636,966 | - | +1.6 | |||
1,637,072 | + | Shewana3_1413 | 0.14 | -0.6 | |
1,637,244 | + | Shewana3_1413 | 0.24 | -1.5 | |
1,637,468 | + | Shewana3_1413 | 0.36 | -0.9 | |
1,637,529 | - | Shewana3_1413 | 0.39 | +1.8 | |
1,637,585 | - | Shewana3_1413 | 0.42 | +1.2 | |
1,637,713 | + | Shewana3_1413 | 0.49 | -0.6 | |
1,637,774 | + | Shewana3_1413 | 0.53 | -1.2 |
Or see this region's nucleotide sequence