Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1411 and Shewana3_1412 are separated by 125 nucleotides Shewana3_1412 and Shewana3_1413 overlap by 4 nucleotides
Shewana3_1411: Shewana3_1411 - hypothetical protein (RefSeq), at 1,632,245 to 1,635,316
_1411
Shewana3_1412: Shewana3_1412 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 1,635,442 to 1,636,821
_1412
Shewana3_1413: Shewana3_1413 - ATPase domain-containing protein (RefSeq), at 1,636,818 to 1,638,629
_1413
Position (kb)
1635
1636
1637 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1634.534 kb on - strand, within Shewana3_1411 at 1634.770 kb on + strand, within Shewana3_1411 at 1634.770 kb on - strand, within Shewana3_1411 at 1635.065 kb on + strand at 1635.119 kb on + strand at 1635.540 kb on + strand at 1635.548 kb on - strand at 1635.772 kb on - strand, within Shewana3_1412 at 1636.232 kb on - strand, within Shewana3_1412 at 1636.331 kb on - strand, within Shewana3_1412 at 1636.386 kb on + strand, within Shewana3_1412 at 1636.483 kb on + strand, within Shewana3_1412 at 1636.819 kb on + strand at 1636.906 kb on - strand at 1636.966 kb on - strand at 1637.072 kb on + strand, within Shewana3_1413 at 1637.244 kb on + strand, within Shewana3_1413 at 1637.468 kb on + strand, within Shewana3_1413 at 1637.529 kb on - strand, within Shewana3_1413 at 1637.585 kb on - strand, within Shewana3_1413 at 1637.713 kb on + strand, within Shewana3_1413 at 1637.774 kb on + strand, within Shewana3_1413
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,634,534 - Shewana3_1411 0.75 +1.8 1,634,770 + Shewana3_1411 0.82 +1.7 1,634,770 - Shewana3_1411 0.82 -0.9 1,635,065 + -0.3 1,635,119 + +0.4 1,635,540 + -0.1 1,635,548 - -0.4 1,635,772 - Shewana3_1412 0.24 -2.0 1,636,232 - Shewana3_1412 0.57 +2.2 1,636,331 - Shewana3_1412 0.64 -0.7 1,636,386 + Shewana3_1412 0.68 -0.3 1,636,483 + Shewana3_1412 0.75 +0.0 1,636,819 + +2.2 1,636,906 - -0.7 1,636,966 - +1.6 1,637,072 + Shewana3_1413 0.14 -0.6 1,637,244 + Shewana3_1413 0.24 -1.5 1,637,468 + Shewana3_1413 0.36 -0.9 1,637,529 - Shewana3_1413 0.39 +1.8 1,637,585 - Shewana3_1413 0.42 +1.2 1,637,713 + Shewana3_1413 0.49 -0.6 1,637,774 + Shewana3_1413 0.53 -1.2
Or see this region's nucleotide sequence