Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1366 and Shewana3_1367 are separated by 7 nucleotides Shewana3_1367 and Shewana3_1368 are separated by 154 nucleotides Shewana3_1368 and Shewana3_1369 are separated by 27 nucleotides Shewana3_1369 and Shewana3_1370 are separated by 12 nucleotides
Shewana3_1366: Shewana3_1366 - CheW protein (RefSeq), at 1,578,935 to 1,579,942
_1366
Shewana3_1367: Shewana3_1367 - CheW protein (RefSeq), at 1,579,950 to 1,580,444
_1367
Shewana3_1368: Shewana3_1368 - hypothetical protein (RefSeq), at 1,580,599 to 1,580,997
_1368
Shewana3_1369: Shewana3_1369 - FlhB domain-containing protein (RefSeq), at 1,581,025 to 1,581,336
_1369
Shewana3_1370: Shewana3_1370 - hypothetical protein (RefSeq), at 1,581,349 to 1,583,400
_1370
Position (kb) 1580
1581 Strain fitness (log2 ratio) -1
0
1
2 at 1579.632 kb on + strand, within Shewana3_1366 at 1579.768 kb on + strand, within Shewana3_1366 at 1579.883 kb on + strand at 1579.913 kb on + strand at 1579.913 kb on + strand at 1580.143 kb on + strand, within Shewana3_1367 at 1580.344 kb on - strand, within Shewana3_1367 at 1580.446 kb on - strand at 1580.481 kb on - strand at 1580.623 kb on + strand at 1580.623 kb on + strand at 1580.653 kb on - strand, within Shewana3_1368 at 1580.881 kb on + strand, within Shewana3_1368 at 1580.889 kb on - strand, within Shewana3_1368 at 1581.108 kb on + strand, within Shewana3_1369 at 1581.116 kb on - strand, within Shewana3_1369 at 1581.439 kb on + strand at 1581.683 kb on + strand, within Shewana3_1370 at 1581.854 kb on - strand, within Shewana3_1370
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,579,632 + Shewana3_1366 0.69 +1.0 1,579,768 + Shewana3_1366 0.83 +1.1 1,579,883 + +0.1 1,579,913 + -0.1 1,579,913 + -0.8 1,580,143 + Shewana3_1367 0.39 +0.9 1,580,344 - Shewana3_1367 0.80 +0.3 1,580,446 - +2.7 1,580,481 - +0.9 1,580,623 + -0.2 1,580,623 + +1.0 1,580,653 - Shewana3_1368 0.14 +1.6 1,580,881 + Shewana3_1368 0.71 +1.8 1,580,889 - Shewana3_1368 0.73 +0.6 1,581,108 + Shewana3_1369 0.27 -1.7 1,581,116 - Shewana3_1369 0.29 +0.6 1,581,439 + +0.3 1,581,683 + Shewana3_1370 0.16 -0.0 1,581,854 - Shewana3_1370 0.25 +0.6
Or see this region's nucleotide sequence