Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1275 and Shewana3_1276 are separated by 84 nucleotides Shewana3_1276 and Shewana3_1277 overlap by 4 nucleotides
Shewana3_1275: Shewana3_1275 - IclR family transcriptional regulator (RefSeq), at 1,486,964 to 1,487,641
_1275
Shewana3_1276: Shewana3_1276 - hypothetical protein (RefSeq), at 1,487,726 to 1,488,133
_1276
Shewana3_1277: Shewana3_1277 - major facilitator transporter (RefSeq), at 1,488,130 to 1,489,353
_1277
Position (kb)
1487
1488
1489 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1486.730 kb on - strand at 1487.036 kb on - strand, within Shewana3_1275 at 1487.051 kb on + strand, within Shewana3_1275 at 1487.070 kb on - strand, within Shewana3_1275 at 1487.187 kb on + strand, within Shewana3_1275 at 1487.188 kb on - strand, within Shewana3_1275 at 1487.293 kb on - strand, within Shewana3_1275 at 1487.463 kb on - strand, within Shewana3_1275 at 1487.626 kb on - strand at 1487.760 kb on + strand at 1487.805 kb on - strand, within Shewana3_1276 at 1487.877 kb on + strand, within Shewana3_1276 at 1487.915 kb on + strand, within Shewana3_1276 at 1487.915 kb on + strand, within Shewana3_1276 at 1488.010 kb on - strand, within Shewana3_1276 at 1488.280 kb on + strand, within Shewana3_1277 at 1488.330 kb on - strand, within Shewana3_1277 at 1488.330 kb on - strand, within Shewana3_1277 at 1488.330 kb on - strand, within Shewana3_1277 at 1488.416 kb on + strand, within Shewana3_1277 at 1488.441 kb on + strand, within Shewana3_1277 at 1488.558 kb on - strand, within Shewana3_1277 at 1488.558 kb on - strand, within Shewana3_1277 at 1488.588 kb on - strand, within Shewana3_1277 at 1488.588 kb on - strand, within Shewana3_1277 at 1488.649 kb on + strand, within Shewana3_1277 at 1488.668 kb on - strand, within Shewana3_1277 at 1488.690 kb on + strand, within Shewana3_1277 at 1488.868 kb on - strand, within Shewana3_1277 at 1488.961 kb on - strand, within Shewana3_1277 at 1489.053 kb on + strand, within Shewana3_1277 at 1489.105 kb on - strand, within Shewana3_1277
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,486,730 - +1.2 1,487,036 - Shewana3_1275 0.11 +1.0 1,487,051 + Shewana3_1275 0.13 -2.7 1,487,070 - Shewana3_1275 0.16 +0.2 1,487,187 + Shewana3_1275 0.33 -2.2 1,487,188 - Shewana3_1275 0.33 -0.1 1,487,293 - Shewana3_1275 0.49 +0.4 1,487,463 - Shewana3_1275 0.74 -0.6 1,487,626 - +1.1 1,487,760 + +0.7 1,487,805 - Shewana3_1276 0.19 +1.7 1,487,877 + Shewana3_1276 0.37 -2.2 1,487,915 + Shewana3_1276 0.46 -0.4 1,487,915 + Shewana3_1276 0.46 -0.1 1,488,010 - Shewana3_1276 0.70 -1.7 1,488,280 + Shewana3_1277 0.12 +0.2 1,488,330 - Shewana3_1277 0.16 -1.3 1,488,330 - Shewana3_1277 0.16 -0.1 1,488,330 - Shewana3_1277 0.16 -1.5 1,488,416 + Shewana3_1277 0.23 -0.5 1,488,441 + Shewana3_1277 0.25 -0.9 1,488,558 - Shewana3_1277 0.35 -1.1 1,488,558 - Shewana3_1277 0.35 -2.9 1,488,588 - Shewana3_1277 0.37 +0.2 1,488,588 - Shewana3_1277 0.37 -1.4 1,488,649 + Shewana3_1277 0.42 +0.6 1,488,668 - Shewana3_1277 0.44 -0.5 1,488,690 + Shewana3_1277 0.46 -0.8 1,488,868 - Shewana3_1277 0.60 -0.2 1,488,961 - Shewana3_1277 0.68 +0.1 1,489,053 + Shewana3_1277 0.75 -1.5 1,489,105 - Shewana3_1277 0.80 -0.9
Or see this region's nucleotide sequence