Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1260 and Shewana3_1261 are separated by 5 nucleotides Shewana3_1261 and Shewana3_1262 are separated by 83 nucleotides Shewana3_1262 and Shewana3_1263 are separated by 26 nucleotides
Shewana3_1260: Shewana3_1260 - no description, at 1,476,070 to 1,476,324
_1260
Shewana3_1261: Shewana3_1261 - hypothetical protein (RefSeq), at 1,476,330 to 1,477,127
_1261
Shewana3_1262: Shewana3_1262 - hypothetical protein (RefSeq), at 1,477,211 to 1,477,495
_1262
Shewana3_1263: Shewana3_1263 - putative replication initiator and transcription repressor protein (RefSeq), at 1,477,522 to 1,478,379
_1263
Position (kb)
1477
1478 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1476.287 kb on + strand, within Shewana3_1260 at 1476.545 kb on - strand, within Shewana3_1261 at 1476.755 kb on + strand, within Shewana3_1261 at 1476.787 kb on + strand, within Shewana3_1261 at 1476.859 kb on - strand, within Shewana3_1261 at 1476.915 kb on + strand, within Shewana3_1261 at 1477.154 kb on + strand at 1477.302 kb on + strand, within Shewana3_1262 at 1477.310 kb on - strand, within Shewana3_1262 at 1477.384 kb on + strand, within Shewana3_1262 at 1477.500 kb on - strand at 1477.587 kb on - strand at 1477.613 kb on - strand, within Shewana3_1263 at 1477.622 kb on + strand, within Shewana3_1263 at 1477.673 kb on + strand, within Shewana3_1263 at 1478.044 kb on - strand, within Shewana3_1263 at 1478.132 kb on + strand, within Shewana3_1263 at 1478.132 kb on + strand, within Shewana3_1263 at 1478.150 kb on + strand, within Shewana3_1263 at 1478.204 kb on - strand, within Shewana3_1263 at 1478.294 kb on - strand at 1478.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,476,287 + Shewana3_1260 0.85 -0.3 1,476,545 - Shewana3_1261 0.27 -0.0 1,476,755 + Shewana3_1261 0.53 -0.0 1,476,787 + Shewana3_1261 0.57 -1.0 1,476,859 - Shewana3_1261 0.66 -0.4 1,476,915 + Shewana3_1261 0.73 -0.3 1,477,154 + -1.7 1,477,302 + Shewana3_1262 0.32 +0.5 1,477,310 - Shewana3_1262 0.35 +1.3 1,477,384 + Shewana3_1262 0.61 +0.4 1,477,500 - -1.6 1,477,587 - -2.9 1,477,613 - Shewana3_1263 0.11 +0.3 1,477,622 + Shewana3_1263 0.12 +0.2 1,477,673 + Shewana3_1263 0.18 +0.5 1,478,044 - Shewana3_1263 0.61 -0.6 1,478,132 + Shewana3_1263 0.71 -0.5 1,478,132 + Shewana3_1263 0.71 -1.7 1,478,150 + Shewana3_1263 0.73 -1.6 1,478,204 - Shewana3_1263 0.79 -1.2 1,478,294 - +0.2 1,478,305 - +0.1
Or see this region's nucleotide sequence