Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1256

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1255 and Shewana3_1256 are separated by 64 nucleotidesShewana3_1256 and Shewana3_1257 are separated by 12 nucleotidesShewana3_1257 and Shewana3_1258 overlap by 4 nucleotides Shewana3_1255: Shewana3_1255 - hypothetical protein (RefSeq), at 1,471,427 to 1,473,172 _1255 Shewana3_1256: Shewana3_1256 - hypothetical protein (RefSeq), at 1,473,237 to 1,474,130 _1256 Shewana3_1257: Shewana3_1257 - patatin (RefSeq), at 1,474,143 to 1,475,105 _1257 Shewana3_1258: Shewana3_1258 - XRE family transcriptional regulator (RefSeq), at 1,475,102 to 1,475,392 _1258 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1472.418 kb on - strand, within Shewana3_1255at 1472.428 kb on + strand, within Shewana3_1255at 1472.503 kb on + strand, within Shewana3_1255at 1472.503 kb on + strand, within Shewana3_1255at 1472.587 kb on + strand, within Shewana3_1255at 1472.816 kb on - strand, within Shewana3_1255at 1472.943 kb on + strand, within Shewana3_1255at 1473.068 kb on - strandat 1473.254 kb on + strandat 1473.255 kb on - strandat 1473.284 kb on + strandat 1473.326 kb on + strandat 1473.592 kb on - strand, within Shewana3_1256at 1473.623 kb on + strand, within Shewana3_1256at 1473.707 kb on - strand, within Shewana3_1256at 1473.828 kb on - strand, within Shewana3_1256at 1473.838 kb on - strand, within Shewana3_1256at 1473.838 kb on - strand, within Shewana3_1256at 1473.838 kb on - strand, within Shewana3_1256at 1473.938 kb on + strand, within Shewana3_1256at 1473.955 kb on + strand, within Shewana3_1256at 1473.964 kb on + strand, within Shewana3_1256at 1474.102 kb on + strandat 1474.136 kb on + strandat 1474.344 kb on - strand, within Shewana3_1257at 1474.427 kb on - strand, within Shewana3_1257at 1474.608 kb on + strand, within Shewana3_1257at 1474.666 kb on + strand, within Shewana3_1257at 1474.687 kb on + strand, within Shewana3_1257at 1474.865 kb on - strand, within Shewana3_1257at 1475.000 kb on + strand, within Shewana3_1257at 1475.008 kb on - strand, within Shewana3_1257

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,472,418 - Shewana3_1255 0.57 -1.2
1,472,428 + Shewana3_1255 0.57 -0.4
1,472,503 + Shewana3_1255 0.62 -1.6
1,472,503 + Shewana3_1255 0.62 -1.4
1,472,587 + Shewana3_1255 0.66 -2.3
1,472,816 - Shewana3_1255 0.80 -0.7
1,472,943 + Shewana3_1255 0.87 -1.6
1,473,068 - -2.4
1,473,254 + -0.6
1,473,255 - +0.5
1,473,284 + +3.5
1,473,326 + +1.0
1,473,592 - Shewana3_1256 0.40 -0.1
1,473,623 + Shewana3_1256 0.43 +0.9
1,473,707 - Shewana3_1256 0.53 -2.0
1,473,828 - Shewana3_1256 0.66 +0.0
1,473,838 - Shewana3_1256 0.67 -0.3
1,473,838 - Shewana3_1256 0.67 -1.4
1,473,838 - Shewana3_1256 0.67 -1.9
1,473,938 + Shewana3_1256 0.78 -0.2
1,473,955 + Shewana3_1256 0.80 -0.4
1,473,964 + Shewana3_1256 0.81 -1.1
1,474,102 + -0.5
1,474,136 + -0.0
1,474,344 - Shewana3_1257 0.21 +1.2
1,474,427 - Shewana3_1257 0.29 +1.2
1,474,608 + Shewana3_1257 0.48 -1.6
1,474,666 + Shewana3_1257 0.54 +0.4
1,474,687 + Shewana3_1257 0.56 +0.2
1,474,865 - Shewana3_1257 0.75 -1.2
1,475,000 + Shewana3_1257 0.89 -0.1
1,475,008 - Shewana3_1257 0.90 +0.4

Or see this region's nucleotide sequence