Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1153 and Shewana3_1154 are separated by 379 nucleotides Shewana3_1154 and Shewana3_1155 are separated by 55 nucleotides
Shewana3_1153: Shewana3_1153 - putative signal transduction histidine kinase (RefSeq), at 1,359,708 to 1,360,868
_1153
Shewana3_1154: Shewana3_1154 - isochorismatase hydrolase (RefSeq), at 1,361,248 to 1,361,793
_1154
Shewana3_1155: Shewana3_1155 - hypothetical protein (RefSeq), at 1,361,849 to 1,362,571
_1155
Position (kb)
1361
1362 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1360.549 kb on + strand, within Shewana3_1153 at 1360.602 kb on + strand, within Shewana3_1153 at 1360.783 kb on + strand at 1360.786 kb on - strand at 1360.851 kb on - strand at 1360.999 kb on + strand at 1361.181 kb on + strand at 1361.191 kb on + strand at 1361.307 kb on + strand, within Shewana3_1154 at 1361.315 kb on - strand, within Shewana3_1154 at 1361.429 kb on + strand, within Shewana3_1154 at 1361.700 kb on + strand, within Shewana3_1154 at 1361.708 kb on - strand, within Shewana3_1154 at 1361.735 kb on - strand, within Shewana3_1154 at 1361.889 kb on + strand at 1362.020 kb on - strand, within Shewana3_1155 at 1362.266 kb on - strand, within Shewana3_1155 at 1362.271 kb on + strand, within Shewana3_1155 at 1362.279 kb on - strand, within Shewana3_1155 at 1362.395 kb on + strand, within Shewana3_1155 at 1362.440 kb on + strand, within Shewana3_1155 at 1362.559 kb on - strand at 1362.712 kb on - strand at 1362.744 kb on - strand at 1362.773 kb on + strand at 1362.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,360,549 + Shewana3_1153 0.72 -1.3 1,360,602 + Shewana3_1153 0.77 -0.2 1,360,783 + +1.8 1,360,786 - +0.6 1,360,851 - -2.0 1,360,999 + -1.6 1,361,181 + -1.4 1,361,191 + -1.6 1,361,307 + Shewana3_1154 0.11 -2.2 1,361,315 - Shewana3_1154 0.12 -1.5 1,361,429 + Shewana3_1154 0.33 -2.2 1,361,700 + Shewana3_1154 0.83 -0.8 1,361,708 - Shewana3_1154 0.84 -1.8 1,361,735 - Shewana3_1154 0.89 +0.6 1,361,889 + +1.4 1,362,020 - Shewana3_1155 0.24 +0.2 1,362,266 - Shewana3_1155 0.58 -0.1 1,362,271 + Shewana3_1155 0.58 +0.1 1,362,279 - Shewana3_1155 0.59 +0.3 1,362,395 + Shewana3_1155 0.76 +0.1 1,362,440 + Shewana3_1155 0.82 -0.1 1,362,559 - -0.6 1,362,712 - +0.3 1,362,744 - +3.4 1,362,773 + -1.5 1,362,781 - -0.4
Or see this region's nucleotide sequence