Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1154
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,360,549 | + | Shewana3_1153 | 0.72 | -1.3 | |
1,360,602 | + | Shewana3_1153 | 0.77 | -0.2 | |
1,360,783 | + | +1.8 | |||
1,360,786 | - | +0.6 | |||
1,360,851 | - | -2.0 | |||
1,360,999 | + | -1.6 | |||
1,361,181 | + | -1.4 | |||
1,361,191 | + | -1.6 | |||
1,361,307 | + | Shewana3_1154 | 0.11 | -2.2 | |
1,361,315 | - | Shewana3_1154 | 0.12 | -1.5 | |
1,361,429 | + | Shewana3_1154 | 0.33 | -2.2 | |
1,361,700 | + | Shewana3_1154 | 0.83 | -0.8 | |
1,361,708 | - | Shewana3_1154 | 0.84 | -1.8 | |
1,361,735 | - | Shewana3_1154 | 0.89 | +0.6 | |
1,361,889 | + | +1.4 | |||
1,362,020 | - | Shewana3_1155 | 0.24 | +0.2 | |
1,362,266 | - | Shewana3_1155 | 0.58 | -0.1 | |
1,362,271 | + | Shewana3_1155 | 0.58 | +0.1 | |
1,362,279 | - | Shewana3_1155 | 0.59 | +0.3 | |
1,362,395 | + | Shewana3_1155 | 0.76 | +0.1 | |
1,362,440 | + | Shewana3_1155 | 0.82 | -0.1 | |
1,362,559 | - | -0.6 | |||
1,362,712 | - | +0.3 | |||
1,362,744 | - | +3.4 | |||
1,362,773 | + | -1.5 | |||
1,362,781 | - | -0.4 |
Or see this region's nucleotide sequence