Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1143 and Shewana3_1144 are separated by 207 nucleotides Shewana3_1144 and Shewana3_1145 are separated by 106 nucleotides Shewana3_1145 and Shewana3_1146 are separated by 129 nucleotides
Shewana3_1143: Shewana3_1143 - extracellular solute-binding protein (RefSeq), at 1,348,307 to 1,349,182
_1143
Shewana3_1144: Shewana3_1144 - peptidase S41 (RefSeq), at 1,349,390 to 1,352,671
_1144
Shewana3_1145: Shewana3_1145 - hypothetical protein (RefSeq), at 1,352,778 to 1,353,200
_1145
Shewana3_1146: Shewana3_1146 - OsmC family protein (RefSeq), at 1,353,330 to 1,353,767
_1146
Position (kb)
1349
1350
1351
1352
1353 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1348.450 kb on - strand, within Shewana3_1143 at 1348.611 kb on + strand, within Shewana3_1143 at 1348.791 kb on + strand, within Shewana3_1143 at 1348.957 kb on - strand, within Shewana3_1143 at 1348.969 kb on - strand, within Shewana3_1143 at 1349.013 kb on - strand, within Shewana3_1143 at 1349.170 kb on - strand at 1349.521 kb on - strand at 1349.528 kb on + strand at 1349.608 kb on - strand at 1349.679 kb on - strand at 1349.821 kb on + strand, within Shewana3_1144 at 1349.929 kb on + strand, within Shewana3_1144 at 1349.971 kb on + strand, within Shewana3_1144 at 1350.031 kb on + strand, within Shewana3_1144 at 1350.136 kb on - strand, within Shewana3_1144 at 1350.288 kb on + strand, within Shewana3_1144 at 1350.450 kb on - strand, within Shewana3_1144 at 1350.901 kb on - strand, within Shewana3_1144 at 1351.309 kb on - strand, within Shewana3_1144 at 1351.790 kb on + strand, within Shewana3_1144 at 1351.790 kb on + strand, within Shewana3_1144 at 1351.862 kb on + strand, within Shewana3_1144 at 1352.052 kb on - strand, within Shewana3_1144 at 1352.052 kb on - strand, within Shewana3_1144 at 1352.420 kb on + strand at 1352.493 kb on + strand at 1352.521 kb on - strand at 1352.700 kb on + strand at 1352.835 kb on - strand, within Shewana3_1145 at 1352.835 kb on - strand, within Shewana3_1145 at 1352.869 kb on + strand, within Shewana3_1145 at 1352.941 kb on + strand, within Shewana3_1145 at 1352.983 kb on + strand, within Shewana3_1145 at 1353.509 kb on + strand, within Shewana3_1146 at 1353.581 kb on - strand, within Shewana3_1146
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,348,450 - Shewana3_1143 0.16 +0.2 1,348,611 + Shewana3_1143 0.35 -1.5 1,348,791 + Shewana3_1143 0.55 +0.1 1,348,957 - Shewana3_1143 0.74 +1.4 1,348,969 - Shewana3_1143 0.76 +0.4 1,349,013 - Shewana3_1143 0.81 -0.3 1,349,170 - +1.8 1,349,521 - -0.4 1,349,528 + +0.5 1,349,608 - +0.2 1,349,679 - +0.1 1,349,821 + Shewana3_1144 0.13 -1.5 1,349,929 + Shewana3_1144 0.16 -0.8 1,349,971 + Shewana3_1144 0.18 -3.3 1,350,031 + Shewana3_1144 0.20 -0.7 1,350,136 - Shewana3_1144 0.23 -1.5 1,350,288 + Shewana3_1144 0.27 -0.1 1,350,450 - Shewana3_1144 0.32 -0.7 1,350,901 - Shewana3_1144 0.46 -1.4 1,351,309 - Shewana3_1144 0.58 -0.5 1,351,790 + Shewana3_1144 0.73 -1.3 1,351,790 + Shewana3_1144 0.73 +0.6 1,351,862 + Shewana3_1144 0.75 -0.5 1,352,052 - Shewana3_1144 0.81 -0.4 1,352,052 - Shewana3_1144 0.81 -0.5 1,352,420 + -0.0 1,352,493 + -0.4 1,352,521 - +0.6 1,352,700 + -1.5 1,352,835 - Shewana3_1145 0.13 -0.5 1,352,835 - Shewana3_1145 0.13 -1.0 1,352,869 + Shewana3_1145 0.22 -1.1 1,352,941 + Shewana3_1145 0.39 -1.4 1,352,983 + Shewana3_1145 0.48 -0.7 1,353,509 + Shewana3_1146 0.41 +0.4 1,353,581 - Shewana3_1146 0.57 -0.4
Or see this region's nucleotide sequence