Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1140
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,344,578 | + | thrA | Shewana3_1139 | 0.71 | +0.1 |
1,344,592 | + | thrA | Shewana3_1139 | 0.72 | +0.7 |
1,344,598 | - | thrA | Shewana3_1139 | 0.72 | -0.9 |
1,344,773 | + | thrA | Shewana3_1139 | 0.79 | -0.6 |
1,344,781 | - | thrA | Shewana3_1139 | 0.79 | +3.4 |
1,344,785 | + | thrA | Shewana3_1139 | 0.79 | +0.3 |
1,344,853 | + | thrA | Shewana3_1139 | 0.82 | -0.6 |
1,345,043 | + | thrA | Shewana3_1139 | 0.90 | +1.0 |
1,345,070 | + | -3.3 | |||
1,345,132 | + | +0.2 | |||
1,345,293 | - | -0.6 | |||
1,345,820 | - | Shewana3_1140 | 0.57 | -0.9 | |
1,345,928 | + | Shewana3_1140 | 0.68 | -0.9 | |
1,345,935 | + | Shewana3_1140 | 0.69 | -0.7 | |
1,345,943 | - | Shewana3_1140 | 0.70 | -1.2 | |
1,345,970 | + | Shewana3_1140 | 0.73 | -0.8 | |
1,345,972 | - | Shewana3_1140 | 0.73 | -1.1 | |
1,345,978 | - | Shewana3_1140 | 0.73 | -1.8 | |
1,345,995 | - | Shewana3_1140 | 0.75 | +1.4 | |
1,346,215 | - | -2.4 | |||
1,346,252 | + | -0.4 | |||
1,346,281 | + | -0.7 | |||
1,346,362 | + | -1.1 | |||
1,346,485 | - | Shewana3_1141 | 0.15 | -2.5 | |
1,347,010 | + | Shewana3_1141 | 0.56 | +0.4 | |
1,347,075 | - | Shewana3_1141 | 0.61 | +0.6 | |
1,347,153 | + | Shewana3_1141 | 0.67 | +0.3 | |
1,347,161 | - | Shewana3_1141 | 0.68 | -0.5 |
Or see this region's nucleotide sequence