Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1140

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthrA and Shewana3_1140 overlap by 4 nucleotidesShewana3_1140 and Shewana3_1141 are separated by 65 nucleotides Shewana3_1139: thrA - bifunctional aspartokinase I/homeserine dehydrogenase I (RefSeq), at 1,342,824 to 1,345,292 thrA Shewana3_1140: Shewana3_1140 - homoserine kinase (RefSeq), at 1,345,289 to 1,346,227 _1140 Shewana3_1141: Shewana3_1141 - threonine synthase (RefSeq), at 1,346,293 to 1,347,576 _1141 Position (kb) 1345 1346 1347Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1344.578 kb on + strand, within thrAat 1344.592 kb on + strand, within thrAat 1344.598 kb on - strand, within thrAat 1344.773 kb on + strand, within thrAat 1344.781 kb on - strand, within thrAat 1344.785 kb on + strand, within thrAat 1344.853 kb on + strand, within thrAat 1345.043 kb on + strand, within thrAat 1345.070 kb on + strandat 1345.132 kb on + strandat 1345.293 kb on - strandat 1345.820 kb on - strand, within Shewana3_1140at 1345.928 kb on + strand, within Shewana3_1140at 1345.935 kb on + strand, within Shewana3_1140at 1345.943 kb on - strand, within Shewana3_1140at 1345.970 kb on + strand, within Shewana3_1140at 1345.972 kb on - strand, within Shewana3_1140at 1345.978 kb on - strand, within Shewana3_1140at 1345.995 kb on - strand, within Shewana3_1140at 1346.215 kb on - strandat 1346.252 kb on + strandat 1346.281 kb on + strandat 1346.362 kb on + strandat 1346.485 kb on - strand, within Shewana3_1141at 1347.010 kb on + strand, within Shewana3_1141at 1347.075 kb on - strand, within Shewana3_1141at 1347.153 kb on + strand, within Shewana3_1141at 1347.161 kb on - strand, within Shewana3_1141

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,344,578 + thrA Shewana3_1139 0.71 +0.1
1,344,592 + thrA Shewana3_1139 0.72 +0.7
1,344,598 - thrA Shewana3_1139 0.72 -0.9
1,344,773 + thrA Shewana3_1139 0.79 -0.6
1,344,781 - thrA Shewana3_1139 0.79 +3.4
1,344,785 + thrA Shewana3_1139 0.79 +0.3
1,344,853 + thrA Shewana3_1139 0.82 -0.6
1,345,043 + thrA Shewana3_1139 0.90 +1.0
1,345,070 + -3.3
1,345,132 + +0.2
1,345,293 - -0.6
1,345,820 - Shewana3_1140 0.57 -0.9
1,345,928 + Shewana3_1140 0.68 -0.9
1,345,935 + Shewana3_1140 0.69 -0.7
1,345,943 - Shewana3_1140 0.70 -1.2
1,345,970 + Shewana3_1140 0.73 -0.8
1,345,972 - Shewana3_1140 0.73 -1.1
1,345,978 - Shewana3_1140 0.73 -1.8
1,345,995 - Shewana3_1140 0.75 +1.4
1,346,215 - -2.4
1,346,252 + -0.4
1,346,281 + -0.7
1,346,362 + -1.1
1,346,485 - Shewana3_1141 0.15 -2.5
1,347,010 + Shewana3_1141 0.56 +0.4
1,347,075 - Shewana3_1141 0.61 +0.6
1,347,153 + Shewana3_1141 0.67 +0.3
1,347,161 - Shewana3_1141 0.68 -0.5

Or see this region's nucleotide sequence