Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1121
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,318,941 | - | Shewana3_1120 | 0.15 | +0.7 | |
1,319,026 | - | Shewana3_1120 | 0.23 | +2.3 | |
1,319,066 | + | Shewana3_1120 | 0.27 | +0.1 | |
1,319,074 | - | Shewana3_1120 | 0.27 | +0.7 | |
1,319,146 | + | Shewana3_1120 | 0.34 | +0.9 | |
1,319,262 | + | Shewana3_1120 | 0.44 | +0.1 | |
1,319,331 | + | Shewana3_1120 | 0.50 | +0.3 | |
1,319,333 | + | Shewana3_1120 | 0.50 | +0.3 | |
1,319,350 | + | Shewana3_1120 | 0.52 | -0.4 | |
1,319,584 | + | Shewana3_1120 | 0.72 | -0.2 | |
1,319,876 | + | -0.3 | |||
1,319,886 | + | +2.0 | |||
1,319,978 | + | surE | Shewana3_1121 | 0.12 | -0.3 |
1,320,132 | - | surE | Shewana3_1121 | 0.32 | +0.5 |
1,320,232 | + | surE | Shewana3_1121 | 0.45 | -0.5 |
1,320,397 | + | surE | Shewana3_1121 | 0.67 | +0.8 |
1,320,433 | + | surE | Shewana3_1121 | 0.72 | -0.1 |
1,320,441 | - | surE | Shewana3_1121 | 0.73 | +0.2 |
1,320,578 | + | -0.2 | |||
1,320,728 | + | Shewana3_1122 | 0.14 | -1.5 | |
1,320,950 | + | Shewana3_1122 | 0.49 | +0.2 | |
1,321,345 | - | -0.2 | |||
1,321,439 | - | +2.3 | |||
1,321,544 | - | Shewana3_1123 | 0.21 | +2.3 |
Or see this region's nucleotide sequence