Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1105
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,298,143 | - | Shewana3_1104 | 0.50 | -2.0 | |
1,298,143 | - | Shewana3_1104 | 0.50 | -1.7 | |
1,298,279 | - | Shewana3_1104 | 0.58 | -2.2 | |
1,298,447 | - | Shewana3_1104 | 0.68 | -0.1 | |
1,298,487 | - | Shewana3_1104 | 0.71 | -1.3 | |
1,298,499 | + | Shewana3_1104 | 0.71 | -1.1 | |
1,298,507 | - | Shewana3_1104 | 0.72 | +0.3 | |
1,298,534 | + | Shewana3_1104 | 0.74 | -1.5 | |
1,298,558 | + | Shewana3_1104 | 0.75 | +0.6 | |
1,298,703 | - | Shewana3_1104 | 0.84 | +0.5 | |
1,299,328 | + | Shewana3_1105 | 0.24 | -1.1 | |
1,299,334 | + | Shewana3_1105 | 0.24 | -0.1 | |
1,299,385 | - | Shewana3_1105 | 0.29 | +0.7 | |
1,299,394 | + | Shewana3_1105 | 0.30 | -1.4 | |
1,299,809 | - | Shewana3_1105 | 0.74 | +3.3 | |
1,299,809 | - | Shewana3_1105 | 0.74 | -1.3 | |
1,300,348 | + | -0.9 | |||
1,300,379 | - | -0.1 | |||
1,300,419 | + | +1.7 | |||
1,300,520 | - | Shewana3_1106 | 0.20 | +2.3 | |
1,300,596 | - | Shewana3_1106 | 0.28 | -1.6 | |
1,300,621 | - | Shewana3_1106 | 0.31 | -0.3 | |
1,300,815 | + | Shewana3_1106 | 0.53 | -0.6 | |
1,300,832 | - | Shewana3_1106 | 0.55 | +0.5 | |
1,300,875 | + | Shewana3_1106 | 0.59 | +0.5 | |
1,301,003 | + | Shewana3_1106 | 0.74 | -0.4 | |
1,301,035 | - | Shewana3_1106 | 0.77 | +0.3 |
Or see this region's nucleotide sequence