Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1104 and Shewana3_1105 are separated by 129 nucleotides Shewana3_1105 and Shewana3_1106 are separated by 276 nucleotides
Shewana3_1104: Shewana3_1104 - recombination and repair protein (RefSeq), at 1,297,313 to 1,298,971
_1104
Shewana3_1105: Shewana3_1105 - transporter, putative (RefSeq), at 1,299,101 to 1,300,063
_1105
Shewana3_1106: Shewana3_1106 - LysR family transcriptional regulator (RefSeq), at 1,300,340 to 1,301,239
_1106
Position (kb)
1299
1300
1301 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1298.143 kb on - strand, within Shewana3_1104 at 1298.143 kb on - strand, within Shewana3_1104 at 1298.279 kb on - strand, within Shewana3_1104 at 1298.447 kb on - strand, within Shewana3_1104 at 1298.487 kb on - strand, within Shewana3_1104 at 1298.499 kb on + strand, within Shewana3_1104 at 1298.507 kb on - strand, within Shewana3_1104 at 1298.534 kb on + strand, within Shewana3_1104 at 1298.558 kb on + strand, within Shewana3_1104 at 1298.703 kb on - strand, within Shewana3_1104 at 1299.328 kb on + strand, within Shewana3_1105 at 1299.334 kb on + strand, within Shewana3_1105 at 1299.385 kb on - strand, within Shewana3_1105 at 1299.394 kb on + strand, within Shewana3_1105 at 1299.809 kb on - strand, within Shewana3_1105 at 1299.809 kb on - strand, within Shewana3_1105 at 1300.348 kb on + strand at 1300.379 kb on - strand at 1300.419 kb on + strand at 1300.520 kb on - strand, within Shewana3_1106 at 1300.596 kb on - strand, within Shewana3_1106 at 1300.621 kb on - strand, within Shewana3_1106 at 1300.815 kb on + strand, within Shewana3_1106 at 1300.832 kb on - strand, within Shewana3_1106 at 1300.875 kb on + strand, within Shewana3_1106 at 1301.003 kb on + strand, within Shewana3_1106 at 1301.035 kb on - strand, within Shewana3_1106
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,298,143 - Shewana3_1104 0.50 -2.0 1,298,143 - Shewana3_1104 0.50 -1.7 1,298,279 - Shewana3_1104 0.58 -2.2 1,298,447 - Shewana3_1104 0.68 -0.1 1,298,487 - Shewana3_1104 0.71 -1.3 1,298,499 + Shewana3_1104 0.71 -1.1 1,298,507 - Shewana3_1104 0.72 +0.3 1,298,534 + Shewana3_1104 0.74 -1.5 1,298,558 + Shewana3_1104 0.75 +0.6 1,298,703 - Shewana3_1104 0.84 +0.5 1,299,328 + Shewana3_1105 0.24 -1.1 1,299,334 + Shewana3_1105 0.24 -0.1 1,299,385 - Shewana3_1105 0.29 +0.7 1,299,394 + Shewana3_1105 0.30 -1.4 1,299,809 - Shewana3_1105 0.74 +3.3 1,299,809 - Shewana3_1105 0.74 -1.3 1,300,348 + -0.9 1,300,379 - -0.1 1,300,419 + +1.7 1,300,520 - Shewana3_1106 0.20 +2.3 1,300,596 - Shewana3_1106 0.28 -1.6 1,300,621 - Shewana3_1106 0.31 -0.3 1,300,815 + Shewana3_1106 0.53 -0.6 1,300,832 - Shewana3_1106 0.55 +0.5 1,300,875 + Shewana3_1106 0.59 +0.5 1,301,003 + Shewana3_1106 0.74 -0.4 1,301,035 - Shewana3_1106 0.77 +0.3
Or see this region's nucleotide sequence