Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1065 and Shewana3_1066 are separated by 138 nucleotides Shewana3_1066 and Shewana3_1067 are separated by 86 nucleotides Shewana3_1067 and Shewana3_1068 are separated by 3 nucleotides
Shewana3_1065: Shewana3_1065 - peptidase U32 (RefSeq), at 1,250,810 to 1,251,811
_1065
Shewana3_1066: Shewana3_1066 - sterol-binding domain-containing protein (RefSeq), at 1,251,950 to 1,252,486
_1066
Shewana3_1067: Shewana3_1067 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 1,252,573 to 1,252,824
_1067
Shewana3_1068: Shewana3_1068 - peptidase U32 (RefSeq), at 1,252,828 to 1,254,192
_1068
Position (kb)
1251
1252
1253 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1250.959 kb on + strand, within Shewana3_1065 at 1250.972 kb on - strand, within Shewana3_1065 at 1250.976 kb on - strand, within Shewana3_1065 at 1250.978 kb on + strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.129 kb on - strand, within Shewana3_1065 at 1251.202 kb on + strand, within Shewana3_1065 at 1251.210 kb on - strand, within Shewana3_1065 at 1251.284 kb on + strand, within Shewana3_1065 at 1251.389 kb on + strand, within Shewana3_1065 at 1251.397 kb on - strand, within Shewana3_1065 at 1251.458 kb on + strand, within Shewana3_1065 at 1251.852 kb on - strand at 1252.007 kb on - strand, within Shewana3_1066 at 1252.212 kb on + strand, within Shewana3_1066 at 1252.219 kb on + strand, within Shewana3_1066 at 1252.276 kb on + strand, within Shewana3_1066 at 1252.362 kb on - strand, within Shewana3_1066 at 1252.483 kb on - strand at 1252.484 kb on - strand at 1252.825 kb on + strand at 1252.825 kb on + strand at 1252.825 kb on + strand at 1252.825 kb on + strand at 1252.835 kb on + strand at 1252.942 kb on + strand at 1252.943 kb on - strand at 1252.970 kb on - strand, within Shewana3_1068 at 1253.377 kb on + strand, within Shewana3_1068
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,250,959 + Shewana3_1065 0.15 +0.2 1,250,972 - Shewana3_1065 0.16 -1.6 1,250,976 - Shewana3_1065 0.17 -0.9 1,250,978 + Shewana3_1065 0.17 -0.3 1,251,045 - Shewana3_1065 0.23 -1.5 1,251,045 - Shewana3_1065 0.23 -1.5 1,251,045 - Shewana3_1065 0.23 -1.1 1,251,129 - Shewana3_1065 0.32 -2.1 1,251,202 + Shewana3_1065 0.39 +0.5 1,251,210 - Shewana3_1065 0.40 +0.7 1,251,284 + Shewana3_1065 0.47 -0.6 1,251,389 + Shewana3_1065 0.58 -0.4 1,251,397 - Shewana3_1065 0.59 -1.3 1,251,458 + Shewana3_1065 0.65 +0.9 1,251,852 - +0.5 1,252,007 - Shewana3_1066 0.11 +1.2 1,252,212 + Shewana3_1066 0.49 -2.3 1,252,219 + Shewana3_1066 0.50 +0.5 1,252,276 + Shewana3_1066 0.61 -0.9 1,252,362 - Shewana3_1066 0.77 +1.2 1,252,483 - -1.8 1,252,484 - -0.3 1,252,825 + -0.6 1,252,825 + -2.0 1,252,825 + -2.9 1,252,825 + +0.7 1,252,835 + -0.8 1,252,942 + -1.5 1,252,943 - -0.7 1,252,970 - Shewana3_1068 0.10 -1.8 1,253,377 + Shewana3_1068 0.40 -0.8
Or see this region's nucleotide sequence