Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1063 and Shewana3_1064 are separated by 34 nucleotides Shewana3_1064 and Shewana3_1065 overlap by 14 nucleotides
Shewana3_1063: Shewana3_1063 - hypothetical protein (RefSeq), at 1,249,155 to 1,249,871
_1063
Shewana3_1064: Shewana3_1064 - peptidase U32 (RefSeq), at 1,249,906 to 1,250,823
_1064
Shewana3_1065: Shewana3_1065 - peptidase U32 (RefSeq), at 1,250,810 to 1,251,811
_1065
Position (kb)
1249
1250
1251 Strain fitness (log2 ratio)
-2
-1
0
1 at 1249.105 kb on - strand at 1249.122 kb on + strand at 1249.251 kb on - strand, within Shewana3_1063 at 1249.580 kb on + strand, within Shewana3_1063 at 1249.600 kb on - strand, within Shewana3_1063 at 1249.703 kb on + strand, within Shewana3_1063 at 1249.703 kb on + strand, within Shewana3_1063 at 1249.880 kb on - strand at 1250.032 kb on + strand, within Shewana3_1064 at 1250.250 kb on + strand, within Shewana3_1064 at 1250.258 kb on - strand, within Shewana3_1064 at 1250.348 kb on + strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.366 kb on - strand, within Shewana3_1064 at 1250.366 kb on - strand, within Shewana3_1064 at 1250.833 kb on + strand at 1250.959 kb on + strand, within Shewana3_1065 at 1250.972 kb on - strand, within Shewana3_1065 at 1250.976 kb on - strand, within Shewana3_1065 at 1250.978 kb on + strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.129 kb on - strand, within Shewana3_1065 at 1251.202 kb on + strand, within Shewana3_1065 at 1251.210 kb on - strand, within Shewana3_1065 at 1251.284 kb on + strand, within Shewana3_1065 at 1251.389 kb on + strand, within Shewana3_1065 at 1251.397 kb on - strand, within Shewana3_1065 at 1251.458 kb on + strand, within Shewana3_1065
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,249,105 - +1.6 1,249,122 + -1.6 1,249,251 - Shewana3_1063 0.13 +1.6 1,249,580 + Shewana3_1063 0.59 +0.2 1,249,600 - Shewana3_1063 0.62 -0.1 1,249,703 + Shewana3_1063 0.76 -1.5 1,249,703 + Shewana3_1063 0.76 -0.3 1,249,880 - -0.2 1,250,032 + Shewana3_1064 0.14 -0.5 1,250,250 + Shewana3_1064 0.37 -0.0 1,250,258 - Shewana3_1064 0.38 -0.4 1,250,348 + Shewana3_1064 0.48 +0.5 1,250,356 - Shewana3_1064 0.49 -0.3 1,250,356 - Shewana3_1064 0.49 -1.0 1,250,356 - Shewana3_1064 0.49 -0.7 1,250,358 + Shewana3_1064 0.49 +0.1 1,250,358 + Shewana3_1064 0.49 +0.5 1,250,358 + Shewana3_1064 0.49 -1.2 1,250,358 + Shewana3_1064 0.49 +0.1 1,250,366 - Shewana3_1064 0.50 +1.4 1,250,366 - Shewana3_1064 0.50 +0.3 1,250,833 + -0.6 1,250,959 + Shewana3_1065 0.15 +0.2 1,250,972 - Shewana3_1065 0.16 -1.6 1,250,976 - Shewana3_1065 0.17 -0.9 1,250,978 + Shewana3_1065 0.17 -0.3 1,251,045 - Shewana3_1065 0.23 -1.5 1,251,045 - Shewana3_1065 0.23 -1.5 1,251,045 - Shewana3_1065 0.23 -1.1 1,251,129 - Shewana3_1065 0.32 -2.1 1,251,202 + Shewana3_1065 0.39 +0.5 1,251,210 - Shewana3_1065 0.40 +0.7 1,251,284 + Shewana3_1065 0.47 -0.6 1,251,389 + Shewana3_1065 0.58 -0.4 1,251,397 - Shewana3_1065 0.59 -1.3 1,251,458 + Shewana3_1065 0.65 +0.9
Or see this region's nucleotide sequence